View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20826_high_6 (Length: 308)
Name: NF20826_high_6
Description: NF20826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20826_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 278
Target Start/End: Original strand, 27246524 - 27246791
Alignment:
| Q |
11 |
agcagagttaatctacgccattgatatctacttacatggagaaccttttctttcaagagttttagttggctgcctaactgcagagaatctgactattgtt |
110 |
Q |
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| T |
27246524 |
agcagaattaatctacgccattgatatctacttacatggagaaccttttctttcaagagttttagttggctgcctaactgcagagaatctgactattgtt |
27246623 |
T |
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| Q |
111 |
tatgactccacattgggcccaacgattcacattccgtcaaaggaggggtggtttgactatttgtcaaagaatttgacgtttagttggatccttatcgatc |
210 |
Q |
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| T |
27246624 |
tatgactccacattgggcccaaggattcacattccgtcaaaggaggggtggtttgaatatttgtcaaagaatttgacgtttagttggatccttatcgatc |
27246723 |
T |
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| Q |
211 |
caactcgtaagtgtgcagtggacttgtttccttcttgttgcaaatctaattttttaggaggatatagc |
278 |
Q |
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| T |
27246724 |
caactcgtaagtgtgcagtggacttgtttccttcttgttgcaaatctaattttttaggaggatatagc |
27246791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 27253305 - 27253539
Alignment:
| Q |
12 |
gcagagttaatctacgccattgatatctacttacatggagaaccttttctttcaagagttttagttggctgcctaactgcagagaatctgactattgttt |
111 |
Q |
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||||| |||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||| || ||| |
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| T |
27253305 |
gcagaattaatccacaccattgatatctacttacatggagaacctttgctttcaagagttttagttggctgcctaactacagagaatactactcttattt |
27253404 |
T |
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| Q |
112 |
atgactccacattgggcccaacgattcacattccgtcaaaggaggggtggtttgactatttgtcaaagaatttgacgtttagttggatccttatcgatcc |
211 |
Q |
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| T |
27253405 |
atgactccacattgggcccaacaattcacattccgttaaaggaggggtggtttgattatttgacaaagaatttgacgttgagttggatagttatcgatcc |
27253504 |
T |
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| Q |
212 |
aactcgtaagtgtgcagtggacttgtttccttctt |
246 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
27253505 |
aactcgtaagtgtgcagtggacttgtttcattctt |
27253539 |
T |
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