View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20827_high_10 (Length: 348)
Name: NF20827_high_10
Description: NF20827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20827_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 328
Target Start/End: Original strand, 34166833 - 34167152
Alignment:
| Q |
9 |
gagatgaacagagaatgcaagagtctggaacttttagctctacactgggagagtatgtccaacttatgaatttttagctaattaaactttccaatgacgt |
108 |
Q |
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| T |
34166833 |
gagaagaacagagaatgcaagagtctggaacttttagctctacactgggagagtatgtccaacttatgaatttttagctaattaaactttccaatgacgt |
34166932 |
T |
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| Q |
109 |
aatttatttcttgagtgaaattagaaggttgtcgtgatcctactagagaaatggactnnnnnnnngcttataaagggtagacaatcctcagcatttaagc |
208 |
Q |
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| T |
34166933 |
aatttatttcttgagtgaaattagaaggttgtcgtgatcctactagagaaatggactaaaaaaaagcttataaagggtagacaatcctcagcatttaagc |
34167032 |
T |
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| Q |
209 |
cagtttgtcggggacgacttagactcaaacctaggatgatattataacctgataaatgtgnnnnnnnnacccatcagtaaaggtacaaactaaaatgttg |
308 |
Q |
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| T |
34167033 |
cagtttgtcggggacgacttagactcaaacctaggatgatattataacctgataaatgtgttttttttacccatcagtaaaggtacaaactaaaatgttg |
34167132 |
T |
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| Q |
309 |
cgtcctaggcatgatgatgt |
328 |
Q |
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|||||||||||||||||||| |
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| T |
34167133 |
cgtcctaggcatgatgatgt |
34167152 |
T |
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