View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20827_high_15 (Length: 328)
Name: NF20827_high_15
Description: NF20827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20827_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 22 - 324
Target Start/End: Complemental strand, 6385247 - 6384929
Alignment:
| Q |
22 |
catcatcatctcccactaaatgcaccaaaaaattataacaaaaaacaactaaacacattggcatgtgatgggaccggaaagtccactaactcacctactt |
121 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6385247 |
catcatcatctcccacaaaatgcaccaaaaaattataacaaaaaacaactaaacacattggcatgtgatgggaccggaaagtccactaactcacctactt |
6385148 |
T |
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| Q |
122 |
ggaaggtaaagatatactccataagagggcatatgatgtagaactgtgtcat----------------atgttagttatgtatttaattaagcggggtag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6385147 |
ggaaggtaaagatatactccataagagggcatatgatgtagaactgtgtcatatggtagtctgtgtcaatgttagttatgtatttaattaagcggggtag |
6385048 |
T |
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| Q |
206 |
ttatgtagctcatgtgtatttaatttggcagtcgactcatgtaggacagttatgtatttaattatgtgggaaagttatgtagctcgtgtgtatttaatta |
305 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6385047 |
ttatgtagctcatgtgtatttaatttggcagtcaactcatgtaggacagttatgtatttaattatgtgggaaagttatgtagctcgtgtgtatttaatta |
6384948 |
T |
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| Q |
306 |
tgtaggagtattatctacc |
324 |
Q |
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|||||||| |||||||||| |
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| T |
6384947 |
tgtaggagaattatctacc |
6384929 |
T |
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