View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20827_high_17 (Length: 326)
Name: NF20827_high_17
Description: NF20827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20827_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 23 - 322
Target Start/End: Original strand, 10124383 - 10124695
Alignment:
| Q |
23 |
atcatcaggtgggacgaagtggtggaagagattaaggttttgtcttggaggtggttgttgggaaggttcaaaggaccggcttgtatggtatacgagtggg |
122 |
Q |
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| T |
10124383 |
atcattaggtgggacgaagtggtggaagagattaaggttttgtcttggaggtggttgttgggaaggttcaaaggaccggcttgtatgttatacgagtggg |
10124482 |
T |
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| Q |
123 |
agtggagccctttcgattgtatgatgagatgattcactgcaggttttttgatctctgggagttgctctaggcctgttggttc-------------ggtgc |
209 |
Q |
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| T |
10124483 |
agtggagccctttcgattgtatgatgagatgattcactgcaggttttttgatctctgggagttgctctaggcctgttggttcggtgcctgtgcttggtgc |
10124582 |
T |
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| Q |
210 |
ctgtgcttggtgctgaaattgctgttcgcttttgttggtttggttttctttcctgctgctgttcggttcaggcctgctgtgcgcgtgttgctgggttttt |
309 |
Q |
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| T |
10124583 |
ctgtgcttggtgctgaaattgctgttcgcttttgttggtttggttttctttcctgctgctgttcggttcaggcctgctgtgcgcgtgttgctgggttttt |
10124682 |
T |
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| Q |
310 |
gtctgtggtgctg |
322 |
Q |
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||||||||||||| |
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| T |
10124683 |
gtctgtggtgctg |
10124695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 23 - 289
Target Start/End: Original strand, 2291661 - 2291917
Alignment:
| Q |
23 |
atcatcaggtgggacgaagtggtggaagagattaaggttttgtcttggaggtggttgttgggaaggttcaaaggaccggcttgtatggtatacgagtggg |
122 |
Q |
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| T |
2291661 |
atcattagatgggacgaagtggtggacgagattaaggttttgtcttggaggtggctgttgggaaggttcaaaggaccggcttgtatgttttacgagtggg |
2291760 |
T |
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| Q |
123 |
agtggagccctttcgattgtatgatgagatgattcactgcaggttttttgatctctgggagttgctctaggcctgttggttcggtgcctgtgcttggtg- |
221 |
Q |
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| T |
2291761 |
aatggagcccttccgattgtatgatgagatgattctctgaa---------------gggagctgctcttggcctgttggtgcggtgcctgtgctgggtgt |
2291845 |
T |
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| Q |
222 |
ctgaaat---tgctgttcgcttttgttggtttgg-ttttctttcctgctgctgttcggttcaggcctgctgt |
289 |
Q |
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| T |
2291846 |
ctgtgtttggtgctgttcgcttttgctggtttggtttttctatactgctgctgtttggttcagccctgctgt |
2291917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 38696465 - 38696335
Alignment:
| Q |
24 |
tcatcaggtgggacgaagtggtggaagagattaaggttttgtcttggaggtggttgttgggaaggttcaaaggaccggcttgtatggtatacgagtggga |
123 |
Q |
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|||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||| || | || |||||| || | || |||||||| |
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| T |
38696465 |
tcataaggtgggacgaagtggtagacgagatcaaggttttgtcttggaggtggttgttggggaggtttaaggtcccagcttgtttgttttatgagtggga |
38696366 |
T |
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| Q |
124 |
gtggagccctttcgattgtatgatgagatga |
154 |
Q |
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|||||| || | |||||| ||||||||||| |
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| T |
38696365 |
gtggagtccctacgattgcttgatgagatga |
38696335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 43073794 - 43073712
Alignment:
| Q |
47 |
gaagagattaaggttttgtcttggaggtggttgttgggaaggttcaaaggaccggcttgtatggtatacgagtgggagtggag |
129 |
Q |
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||||| |||||||| ||||||||||||||||||||||| ||| | || | |||| |||||| | ||||||||||| ||||| |
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| T |
43073794 |
gaagatattaaggtgttgtcttggaggtggttgttgggtaggctaaatgttacggcgtgtatgttctacgagtgggaatggag |
43073712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 31524932 - 31524972
Alignment:
| Q |
44 |
gtggaagagattaaggttttgtcttggaggtggttgttggg |
84 |
Q |
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| T |
31524932 |
gtggacgagatcaaggttttgtcttggagatggttgttggg |
31524972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 12140122 - 12140090
Alignment:
| Q |
56 |
aaggttttgtcttggaggtggttgttgggaagg |
88 |
Q |
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| T |
12140122 |
aaggtgttgtcttggaggtggttgttgggaagg |
12140090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 12172526 - 12172566
Alignment:
| Q |
44 |
gtggaagagattaaggttttgtcttggaggtggttgttggg |
84 |
Q |
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||||| ||||| ||||||||||||||||| ||||||||||| |
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| T |
12172526 |
gtggacgagatcaaggttttgtcttggagatggttgttggg |
12172566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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