View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20827_high_18 (Length: 318)
Name: NF20827_high_18
Description: NF20827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20827_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 6 - 302
Target Start/End: Original strand, 1390788 - 1391086
Alignment:
| Q |
6 |
aggagcagagaggcgacgactgaggtagattttgaagatgagaatggagactctgattttctagaaagctgtgaatcaagtgaggatgatggtattcaaa |
105 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1390788 |
aggaacagtgaggcgacaactgaggtagattttgaagatgagaatggagactctgattttctagaaagctgtgaatcaagtgaggatgatggtattcaaa |
1390887 |
T |
|
| Q |
106 |
ggaaaaagaagaaatacaataggtttaagtttcctgaaaatgatgagactgtgatatttgaagagggacagatttttgcaactgctttgttggt-aaaaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1390888 |
ggaaaaagaagaaatacaataggtttaagtttcctgaaaatgatgagactgtgatatttgaagagggacagatttttgcaactgctttgttggtaaaaaa |
1390987 |
T |
|
| Q |
205 |
atgttgtgaaagaatatgctctacagaagaagaagaatgttcacttgaagaaaagtgagaaaaggagaattattgtgaagtgtagtgat-gatgtccat |
302 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1390988 |
atgctgtgaaagaatatgctctacagaagaagaagaatgttcacttgaagaaaagtgagaaaaggagaattattgtgaagtgtagtgatggatgtccat |
1391086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 31 - 165
Target Start/End: Complemental strand, 28850191 - 28850057
Alignment:
| Q |
31 |
tagattttgaagatgagaatggagactctgattttctagaaagctgtgaatcaagtgaggatgatggtattcaaaggaaaaagaagaaatacaataggtt |
130 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| ||||||| | ||||||||| ||||||||||||||||| |
|
|
| T |
28850191 |
tagattttgaagatgagaatggagactcagattttctagaaagttgtgaatcaggtgaggaggatggtaatgcaaggaaaaataagaaatacaataggtt |
28850092 |
T |
|
| Q |
131 |
taagtttcctgaaaatgatgagactgtgatatttg |
165 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
28850091 |
taagtttcctggaaatgatgagattgtgatatttg |
28850057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 6 - 302
Target Start/End: Complemental strand, 8065985 - 8065688
Alignment:
| Q |
6 |
aggagcagagaggcgacgactgaggtagattttgaagatgagaatggagactctgattttctagaaagctgtgaatcaagtgaggatgatggtattcaaa |
105 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8065985 |
aggaacagtgaggcgacaactgaggtagattttgaagatgagaatggagactctgattttctagaaagttgtgaatcaagtgaggatgatggtattcaaa |
8065886 |
T |
|
| Q |
106 |
ggaaaaagaagaaatacaataggtttaagtttcctgaaaatgatgagactgtgatatttgaagagggacagatttttgcaactgctttgttggtaaaaaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8065885 |
ggaaaaagaagaaatacaataggtttaagtttcctgaaaatgatgagactgtgatatttgaagagggacagatttttgcaactgctttgttggtaaaaaa |
8065786 |
T |
|
| Q |
206 |
tgttgtgaaagaatatgctctacagaagaagaagaatgttcacttgaagaaaagtgagaaaaggagaattattgtgaagtgtagtgat-gatgtccat |
302 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8065785 |
tgctgtgaaagaatatgctctacagaagaagaagaatgttcacttgaagaaaagtgagaaaaagagaattattgtgaagtgtagtgatggatgtccat |
8065688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 24 - 294
Target Start/End: Complemental strand, 48056877 - 48056607
Alignment:
| Q |
24 |
actgaggtagattttgaagatgagaatggagactctgattttctagaaagctgtgaatcaagtgaggatgatggtattcaaaggaaaaagaagaaataca |
123 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48056877 |
actgagctagattttgaagatgagaatggagactctgattttctagaaagttgtgaatcaagtgaggatgatggtattgaaaggaaaaagaagaaataca |
48056778 |
T |
|
| Q |
124 |
ataggtttaagtttcctgaaaatgatgagactgtgatatttgaagagggacagatttttgcaactgctttgttggtaaaaaatgttgtgaaagaatatgc |
223 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||| |
|
|
| T |
48056777 |
ataggtttaagtttcttggaaatgatgagactgtgatatttgaagagggacagatttttgcaactactttgttaatcaaaaatgttgtgaaagaatatgc |
48056678 |
T |
|
| Q |
224 |
tctacagaagaagaagaatgttcacttgaagaaaagtgagaaaaggagaattattgtgaagtgtagtgatg |
294 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
48056677 |
tctacagaacaagaagaatgttcacttgaagaaaagtgagaaaatgataattattgtgaagtgtagtgatg |
48056607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 32 - 307
Target Start/End: Complemental strand, 9179185 - 9178909
Alignment:
| Q |
32 |
agattttgaagatgagaatggagactctgattttctagaaagctgtgaatcaagtgaggatgatggtattcaaaggaaaaagaagaaatacaataggttt |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| | || ||| ||||||||||||||||||||| |
|
|
| T |
9179185 |
agattttgaagatgagaatggagactctgattttctagaaagttgtgaatcaattaaggatgatggtactgcaaagaagaagaagaaatacaataggttt |
9179086 |
T |
|
| Q |
132 |
aagtttcctgaaaatgatgagactgtgatatttgaagagggacagatttttgcaactgctttgttggtaaaaaatgttgtgaaagaatatgctctacaga |
231 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
9179085 |
aagtttcctggaaatgatgagactgtgttatttgaagagggacagatacttgcaactgctttgttaatcaaaaatagtgtgaaagaatatgctctacaga |
9178986 |
T |
|
| Q |
232 |
agaagaagaatgttcacttgaagaaaagtgagaaaaggagaattattgtgaagtgtagtgat-gatgtccatctcat |
307 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
9178985 |
acaggaagaatgttcacttgaagaaaagtgagaaaaggagaattattgtgaagtgtagtgatggatgtccatatcat |
9178909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University