View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20827_high_20 (Length: 310)
Name: NF20827_high_20
Description: NF20827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20827_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 21 - 303
Target Start/End: Complemental strand, 12814421 - 12814139
Alignment:
| Q |
21 |
acatcatcaggcatagctgcattgttaataccaggggggaggacaacacattcgaggtttggctttcctctactaataaatgaatcttctacatgtacca |
120 |
Q |
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| T |
12814421 |
acatcatcaggcataactgcattgttaataccagggggaaggacaacacattcgaggttttgcattcctctactaataaatgaatcttctacatgtacca |
12814322 |
T |
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| Q |
121 |
ttgaactagattccccccttgggaaattgatagtgaaagccaagcttataatatgggatgacgcaccaatgttgcatcgattttgctttgaggccgttga |
220 |
Q |
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| T |
12814321 |
ttgaaccagattccctccttgggaaattgatagtgaaagccaagcttataatatgggatgaagcaccaatgttgcatcgattttgctttgaggccgttga |
12814222 |
T |
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| Q |
221 |
tagaaccttcagagagataatgaaagaggtggacgcaaaaaataaaacaattccatttggagggaaggttgtggtctgtggtg |
303 |
Q |
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| T |
12814221 |
tagaaccttcagagacataatgaaggaggtggacgcgaaaaataaaacaattccatttggagggaaggttgtggtctttggtg |
12814139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 22 - 303
Target Start/End: Original strand, 16968824 - 16969099
Alignment:
| Q |
22 |
catcatcaggcatagctgcattgttaataccaggggggaggacaacacattcgaggtttggctttcctctactaataaatgaatcttctacatgtaccat |
121 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||| | |||||||||||| || ||||| |||||||||||||||||||||| |||||||| |
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| T |
16968824 |
catcatcaggcatagctgcattgttaataccaggtggaaggacagcccattcgaggttttgcattcctgtactaataaatgaatcttctacgtgtaccat |
16968923 |
T |
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| Q |
122 |
tgaactagattccccccttgggaaattgatagtgaaagccaagcttataatatgggatgacgcaccaatgttgcatcgattttgctttgaggccgttgat |
221 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| ||||| | |||||||||||||| |||||| |
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| T |
16968924 |
tgaaccggattccccccttgggaaattagtagtgaaagccaagcttataatataggatgaagcaccaatgatgcataggttttgctttgaggctgttgat |
16969023 |
T |
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| Q |
222 |
agaaccttcagagagataatgaaagaggtggacgcaaaaaataaaacaattccatttggagggaaggttgtggtctgtggtg |
303 |
Q |
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|| |||| |||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
16969024 |
------ttttgagacataatgaaggaggtggacctgaaaaataaaaaaattccatttggagggaaggttgtggtctttggtg |
16969099 |
T |
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