View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20827_high_5 (Length: 416)
Name: NF20827_high_5
Description: NF20827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20827_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 23 - 387
Target Start/End: Complemental strand, 29981979 - 29981615
Alignment:
| Q |
23 |
atcatcaagaggaacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataag |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29981979 |
atcatcaagaggaacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataag |
29981880 |
T |
|
| Q |
123 |
gcaagaaataatggcttgcctttttggaacaaaaaacaacatgacagcaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtca |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29981879 |
gcaagaaataatggcttgcctttttggaacaaaaaacaacatgacaacaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtca |
29981780 |
T |
|
| Q |
223 |
atgttcgtagtatgacagcaatttcatctctcaataacattcatgaagacatttgttcaagtgcacaccaaaagcgagttgcgatgattctacttccgtt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29981779 |
atgttcgtagtatgacagcaatttcatctctcaataacattcatgaagacatttgttcaagtgcacaccaaaagcgagttgcgatgattctacttccgtt |
29981680 |
T |
|
| Q |
323 |
tcacaaacaccaacgagttgatggaactatggaatcattaggacactcgtttcgcgtaatgaatg |
387 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
29981679 |
tcacaaacaccaacgagttgatggaactatggaatcattagggcactcgtttcgcgtaatgaatg |
29981615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 35 - 257
Target Start/End: Original strand, 8156063 - 8156284
Alignment:
| Q |
35 |
aacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataaggcaagaaataat |
134 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
8156063 |
aacacgaaagcgagcaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataagaatggttcataaggcaagaaataat |
8156162 |
T |
|
| Q |
135 |
ggcttgcctttttggaacaaaaaacaacatgacagcaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtcaatgttcgtagta |
234 |
Q |
| |
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||| |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8156163 |
ggcatgcccttt-ggaacaaaaaacaacatgacaacaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtcaatgttcgtccta |
8156261 |
T |
|
| Q |
235 |
tgacagcaatttcatctctcaat |
257 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
8156262 |
tgacagcaatttcatctctcaat |
8156284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 387
Target Start/End: Original strand, 51404730 - 51405083
Alignment:
| Q |
31 |
gaggaacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataaggcaagaaa |
130 |
Q |
| |
|
||||||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||||||| ||||||| || | |||||||| || ||| | || |
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|
| T |
51404730 |
gaggaacccgaaagcgaggaagactctgtatctatgcaatgcacttgatggaactctcagaaagatcttcagctatctccatggttcacaaagcacgtaa |
51404829 |
T |
|
| Q |
131 |
taatggcttgcctttttggaacaaaaaacaacatgacagcaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtcaatgttcgt |
230 |
Q |
| |
|
||||| |||| |||||||||||||||||| |||| |||| |||||||| || || || ||| | |||||| | || | ||||||||||||||| |
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|
| T |
51404830 |
caatggaatgcccttttggaacaaaaaacaaaatga---tgaagatcaaatggttatcgctttccaaacctatggaaaattgaacagtgtcaatgttcgt |
51404926 |
T |
|
| Q |
231 |
agtatgacagcaatttcatctctcaataacattcatgaagacatttgttcaagtgcacaccaaaagcgagttgcgatgattctacttccgtttcacaaac |
330 |
Q |
| |
|
|||||||| ||||| |||||| ||||| |||||||| |||||| | ||||| || |||||||| | |||| || || ||||| || || |||| |
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|
| T |
51404927 |
cccatgacagccatttctgctctcagcaacatccatgaagatatttgtactagtgctcatcaaaagcgtgcctcgataatactccttccattccataaac |
51405026 |
T |
|
| Q |
331 |
accaacgagttgatggaactatggaatcattaggacactcgtttcgcgtaatgaatg |
387 |
Q |
| |
|
|||| || | |||||||| ||||| ||||||||||| || |||| |||||||||| |
|
|
| T |
51405027 |
accagcgtatagatggaacgatggagtcattaggacattcatttcatgtaatgaatg |
51405083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 23 - 257
Target Start/End: Original strand, 7674772 - 7675006
Alignment:
| Q |
23 |
atcatcaagaggaacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataag |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
7674772 |
atcatcaagaggaacacgaaagcgaggaaagttgtgtatatatgcaatgcacttaatggaactctgagaaagaccttcagccataacaatggttcataag |
7674871 |
T |
|
| Q |
123 |
gcaagaaataatggcttgcctttttggaacaaaaaacaacatgacagcaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtca |
222 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
7674872 |
gcaagaaataatggcatgcccttttggaacaaaaaacaacatgacaacaaagaccaaatggtaattgcatttgaagcttatggacatttaagtagtgtca |
7674971 |
T |
|
| Q |
223 |
atgttcgtagtatgacagcaatttcatctctcaat |
257 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| |
|
|
| T |
7674972 |
atgttcgtcctatgacaacaatttcatctctcaat |
7675006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 23 - 257
Target Start/End: Complemental strand, 36613673 - 36613439
Alignment:
| Q |
23 |
atcatcaagaggaacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataag |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36613673 |
atcatcaagaggaacacgaaagcgaggaaagttgtgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataag |
36613574 |
T |
|
| Q |
123 |
gcaagaaataatggcttgcctttttggaacaaaaaacaacatgacagcaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtca |
222 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36613573 |
gcaagaaataatggcatgcccttttggaacaaaaaacaacatgacaacaaagaccaaatggtaattgcatttgaagcttatggacatttaagtagtgtca |
36613474 |
T |
|
| Q |
223 |
atgttcgtagtatgacagcaatttcatctctcaat |
257 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||||| |
|
|
| T |
36613473 |
atgttcgtcctgtgacaacaatttcatctctcaat |
36613439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 23 - 257
Target Start/End: Complemental strand, 25523896 - 25523662
Alignment:
| Q |
23 |
atcatcaagaggaacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataag |
122 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25523896 |
atcatcaagaggaacacgaaagcaaggaaagttgtgtatatatgcaatgcacttaatagaactctcagaaagaccttcagccataacaatggttcataag |
25523797 |
T |
|
| Q |
123 |
gcaagaaataatggcttgcctttttggaacaaaaaacaacatgacagcaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtca |
222 |
Q |
| |
|
|||||||||| |||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25523796 |
gcaagaaatattggcatgcccttttggaacaaaaaacaacatgacaaaaaagaccaaatggtaattgcatttgaagcttatggacatttaagtagtgtca |
25523697 |
T |
|
| Q |
223 |
atgttcgtagtatgacagcaatttcatctctcaat |
257 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| |
|
|
| T |
25523696 |
ttgttcgtcctatgacaacaatttcatctctcaat |
25523662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 47370102 - 47370132
Alignment:
| Q |
23 |
atcatcaagaggaacacgaaagcgaggaaag |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
47370102 |
atcatcaagaggaacacgaaagcgaggaaag |
47370132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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