View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20827_high_9 (Length: 357)
Name: NF20827_high_9
Description: NF20827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20827_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 22 - 302
Target Start/End: Complemental strand, 13211098 - 13210818
Alignment:
| Q |
22 |
catcatcaggaaacaccaaaaacgacgcagcaccagcaacaaaagcaggagtatataacaataacataccacttttactcgacaattttatcatcttctt |
121 |
Q |
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| T |
13211098 |
catcatcaggaaacaccaaaaacgacgcagcaccagcaacaaaagcaggagtatacaacaataacataccacttttactcgacaattttatcatcttctt |
13210999 |
T |
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| Q |
122 |
cttcttcttatcaccattgttattatctacgttccagaatttggaatagtttaaatgcttccctctaatttcattgatacctgcgtttgcaagtgagaca |
221 |
Q |
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| T |
13210998 |
cttcttcttatcaccattgttattttctacgttccagaatttggaatagtttaaatgcttccctctaacttcattgatacctgcgtttgcaagggagaca |
13210899 |
T |
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| Q |
222 |
catgttatgacggacatggtggtgatgaatagtgatggtgggggtgggaataggaagtttaggaacgtggagaatgtcatg |
302 |
Q |
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| T |
13210898 |
catgttatgacagacatggtggtgatgaatagtgaaggtgggggtgggaataggaagtttaggaacgtggagaatgtcatg |
13210818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 13184860 - 13184804
Alignment:
| Q |
138 |
ttgttattatctacgttccagaatttggaatagtttaaatgcttccctctaatttca |
194 |
Q |
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| T |
13184860 |
ttgttattatttgcattccaaaatttggaataattcaaatgctttcctctaatttca |
13184804 |
T |
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