View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20828_high_10 (Length: 320)
Name: NF20828_high_10
Description: NF20828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20828_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 23 - 308
Target Start/End: Original strand, 53096052 - 53096337
Alignment:
| Q |
23 |
atcatcagatcatgaggaagagggaacaaggggggacatcattaccaaaagcattcataagcttacttgctttagaggatcacattttgcaggcatcgga |
122 |
Q |
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| T |
53096052 |
atcatcagatcatgaggaagagggaacaaggggggacatcattaccaaaagcattcataagcttacttgctttagaggatcacattttgcaggcatcgga |
53096151 |
T |
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| Q |
123 |
ggatccttagagagagatatgtcaagataatggcactgctgctgaagaataccatttttagtttcaggaaaaatgtccaaactagcagaatgaactgttc |
222 |
Q |
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| T |
53096152 |
ggatccttagagagagatatgtcaagataatggcactgctgctgaagaataccatttttagtttcaggaaaaatgtccaaactagcagaatgaactgttc |
53096251 |
T |
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| Q |
223 |
caacatcaaaactatttccatttctagtcccatttgagttttgtgctttgattagaactccacactttgatccttggtgtactctg |
308 |
Q |
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| T |
53096252 |
caacatcaaaactatttccatttctcgtcccatttgagttttgtgctttgattagaactccacactttgatccttggtgtactctg |
53096337 |
T |
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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 195 - 277
Target Start/End: Complemental strand, 1369483 - 1369401
Alignment:
| Q |
195 |
atgtccaaactagcagaatgaactgttccaacatcaaaactatttccatttctagtcccatttgagttttgtgctttgattag |
277 |
Q |
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||||||||||||| || ||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
1369483 |
atgtccaaactagtagtatgaactgttccagcatcaaaactatttccatttctcatcccattagagttttgtgctttgattag |
1369401 |
T |
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