View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20828_high_12 (Length: 313)
Name: NF20828_high_12
Description: NF20828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20828_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 28183479 - 28183761
Alignment:
| Q |
11 |
gcagagttgttcaagttataatgttgatttcacttagggtgtttcaagccgagacgacttggagagtagttggttttatgtcat--attgttggcttgtt |
108 |
Q |
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| T |
28183479 |
gcagagttgttcaagttataatgttgatctcacttagggtgtttcaagccgagacgacttggagagtaattggttttatgtcatgtattgttggcttgtt |
28183578 |
T |
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| Q |
109 |
atgttatgctctaagcccttctttcaatcgattatttggaaggtggaatcctttcaaggtctttctctatatagcattgtccttagccatcttaaccatc |
208 |
Q |
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| T |
28183579 |
atgttatgctctaagcccttctttcaatcgattatttggaaggtggaatcctttcaaggtctttctctatgtagcgttgtccttagccatcttaaccacc |
28183678 |
T |
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| Q |
209 |
ataatttttacaaagaaggcatcaccttccccacggcatgttcaaatcnnnnnnncttgcataacctttgtggttttgatgat |
291 |
Q |
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| T |
28183679 |
atattagttgtaaagcaggcatcaccttccacgcgccatgttcaactaaaaaacacttgcataacctttgtggttttgatgat |
28183761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 29527044 - 29526939
Alignment:
| Q |
99 |
ttggcttgttatgttatgctctaagcccttctttcaatcgattatttggaaggtggaatcctttcaaggtctttctctatatagcattgtccttagccat |
198 |
Q |
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| T |
29527044 |
ttggcttgttaagttatgctctaggcccttctttcaatcgattatttggaaggtggaatcctttcaaggtctttctctatgtagtgttgtccttagccat |
29526945 |
T |
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| Q |
199 |
cttaac |
204 |
Q |
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|||||| |
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| T |
29526944 |
cttaac |
29526939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 56 - 178
Target Start/End: Complemental strand, 29529091 - 29528967
Alignment:
| Q |
56 |
aagccgagacgacttggagagtagttggttttatgtca--tattgttggcttgttatgttatgctctaagcccttctttcaatcgattatttggaaggtg |
153 |
Q |
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|||| |||| ||| |||||||||||||| |||||||| | | |||||| |||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
29529091 |
aagctgagaagacgtggagagtagttgggcttatgtcaagtgtagttggcctgttatgttatgctctgagcccttctttcaatcgattaattggaaggtg |
29528992 |
T |
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| Q |
154 |
gaatcctttcaaggtctttctctat |
178 |
Q |
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||| ||||||||| ||||||||||| |
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| T |
29528991 |
gaaacctttcaagttctttctctat |
29528967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 29475359 - 29475320
Alignment:
| Q |
110 |
tgttatgctctaagcccttctttcaatcgattatttggaa |
149 |
Q |
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| T |
29475359 |
tgttatgctctgagcccttctttcaatcgattaattggaa |
29475320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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