View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20828_high_14 (Length: 311)
Name: NF20828_high_14
Description: NF20828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20828_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 30 - 289
Target Start/End: Complemental strand, 42894265 - 42894006
Alignment:
| Q |
30 |
tgaaacagagtactctgtttctaactctgttattactctaactcttcttattgttgttgttctcagcgttgagaaaatcaagcaaaacggtgctgtgaca |
129 |
Q |
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| T |
42894265 |
tgaaacagagtactctgtttctaactctgttattactctaactcttcttattgttgttgttctcagcgttgagaaaatcaagcaaaacggtgctgtgaca |
42894166 |
T |
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| Q |
130 |
ttttggacattttggatcattctcagagagcatcacatacatgagacaacgaggacaacctactaacagcatggaggttgcttcagggctgcttgatcca |
229 |
Q |
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| T |
42894165 |
ttttggacattttggatcattctcagagagcatcacatacatgagacaacgaggacaacctactaacagcatggaggttgcttcagggctgcttgatcca |
42894066 |
T |
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| Q |
230 |
ttctcagatgaaacacatgaactcggcggcgacaccgacgctgatcgtgttggtgatgat |
289 |
Q |
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| T |
42894065 |
ttctcagatgaaacacatgaactcggcggcgacaccgacgctgatcgtgttggtgatgat |
42894006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 220
Target Start/End: Original strand, 25583631 - 25583747
Alignment:
| Q |
104 |
aaatcaagcaaaacggtgctgtgacattttggacattttggatcattctcagagagcatcacatacatgagacaacgaggacaacctactaacagcatgg |
203 |
Q |
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|||||||| ||||| ||||| | |||||| || || |||||||||| ||||| ||||| |||||||| ||||||||||||||||| || || | ||||| |
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| T |
25583631 |
aaatcaagtaaaacagtgcttttacatttagggcactttggatcatcttcagaaagcatgacatacataagacaacgaggacaaccaaccaaaaccatgg |
25583730 |
T |
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| Q |
204 |
aggttgcttcagggctg |
220 |
Q |
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| T |
25583731 |
aagtggcttctgggctg |
25583747 |
T |
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