View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20828_high_5 (Length: 345)
Name: NF20828_high_5
Description: NF20828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20828_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 30 - 332
Target Start/End: Complemental strand, 1909235 - 1908933
Alignment:
| Q |
30 |
tttaacacaaaacacatcttctcttttgatttttacatacccttgggtgataaacaattaatacaaattattcannnnnnnnnnnnnnnnnnnnnnnnna |
129 |
Q |
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| T |
1909235 |
tttaacacaaaacacatcttctcttttgatttttacatacccttgggtgataaacaattaatacaaattattcattttttctcttttctttttcttttca |
1909136 |
T |
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| Q |
130 |
atttcaaaggttgtcatgatagtatttgagattttcagatttccaccttattccttgaaatactagcaaacctccttatctctcctaacttgaacaaaac |
229 |
Q |
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| T |
1909135 |
atttcaaaggttgtcaagatagtatttgagattttcagatttccaccttattacttgaaatagtagcaaacctccttatctctcctaacttgaacaaaac |
1909036 |
T |
|
| Q |
230 |
catattttaaatgattgctcctatatcctcagtgaaggaacacaatatcatgaaggttcagggttttatattcatgaaaaatcataatcttccttattgt |
329 |
Q |
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| T |
1909035 |
catattttaaatgattgctcctatatcctaagtgaaggaacacaatatcatgaaggttcagggttttatattcatgaaaaatcataatcttccttattgt |
1908936 |
T |
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| Q |
330 |
tca |
332 |
Q |
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||| |
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| T |
1908935 |
tca |
1908933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 8300408 - 8300485
Alignment:
| Q |
226 |
aaaccatattttaaatgattgctcctatatcctcagtgaaggaacacaatatcatgaaggttcagggttttatattca |
303 |
Q |
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|||||||| ||||||||||||||||| ||||| || || | ||||||||| ||||||||||| ||||||||||||| |
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| T |
8300408 |
aaaccataatttaaatgattgctcctttatcccaagacaaagtacacaatataatgaaggttcatggttttatattca |
8300485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 313
Target Start/End: Complemental strand, 4607661 - 4607539
Alignment:
| Q |
194 |
agcaaacctccttatctctcct-aacttgaacaaaaccatattttaaatgattgctcctatatcctcagtgaaggaacacaatatcatgaaggttcaggg |
292 |
Q |
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||||| ||||||||||| ||| |||||| |||||||||||| |||||||||| |||||||||||| || |||| ||||||| | |||||||| | || |
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| T |
4607661 |
agcaagcctccttatctttccccaacttgcacaaaaccatatcttaaatgatttctcctatatcctaagacaagggacacaattttgtgaaggtttatgg |
4607562 |
T |
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| Q |
293 |
ttttata--ttcatgaaaaatca |
313 |
Q |
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||||||| |||||||||||||| |
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| T |
4607561 |
ttttatatgttcatgaaaaatca |
4607539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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