View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20828_high_6 (Length: 344)
Name: NF20828_high_6
Description: NF20828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20828_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 29 - 237
Target Start/End: Original strand, 24946501 - 24946709
Alignment:
| Q |
29 |
actaagcatattgaaatttattgccattttatccgtgaaaaagttctttctaaagaagtaatcactgaatttgttacttcaaatgatcaactgacagaca |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24946501 |
actaagcatattgaaatttattgccattttatccgtgaaaaagttctttctaaagaagtaatcactgaatttgttacttcaaatgatcaactgccagaca |
24946600 |
T |
|
| Q |
129 |
tctttacaaaatccttaaggggaccgcgaattcaaaatatttgttccaagcttggagcatttaatctatatgctccgtcttgagggagagtgttggaatt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24946601 |
tctttacaaaatccttaaggggaccgcgaattcaaaatatttgttccaagcttggagcatttaatctatatgctccgtcttgagggggagtgttggaatt |
24946700 |
T |
|
| Q |
229 |
atagaataa |
237 |
Q |
| |
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|||||||| |
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| T |
24946701 |
gtagaataa |
24946709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 29 - 237
Target Start/End: Original strand, 20707211 - 20707419
Alignment:
| Q |
29 |
actaagcatattgaaatttattgccattttatccgtgaaaaagttctttctaaagaagtaatcactgaatttgttacttcaaatgatcaactgacagaca |
128 |
Q |
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||||| |||||||| ||| |||| ||||| || || || ||||| |||||||||||| | ||||| |||| |||| || || |||||| || |||||| |
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| T |
20707211 |
actaaacatattgagattgattgtcatttcattcgggagaaagtcctttctaaagaaattatcaccgaatcggttagctctaacgatcaattggcagaca |
20707310 |
T |
|
| Q |
129 |
tctttacaaaatccttaaggggaccgcgaattcaaaatatttgttccaagcttggagcatttaatctatatgctccgtcttgagggagagtgttggaatt |
228 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||| |
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| T |
20707311 |
tcttcacaaaatccttaaggggaccgcgaattcaaagtatttgttccaagcttggagcatttgatctatatgctccatcttgagggggagtgttggaatt |
20707410 |
T |
|
| Q |
229 |
atagaataa |
237 |
Q |
| |
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||||||||| |
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| T |
20707411 |
atagaataa |
20707419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 25440086 - 25440025
Alignment:
| Q |
237 |
agagttttgataattgaacacagaatatgaaacacaatacagataccgtataaaatactgca |
298 |
Q |
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||||||||||||| |||||||| |||||||||||||||||||| ||| |||||||||||||| |
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| T |
25440086 |
agagttttgataactgaacacaaaatatgaaacacaatacagacaccatataaaatactgca |
25440025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 36829633 - 36829683
Alignment:
| Q |
229 |
atagaataagagttttgataattgaacacagaatatgaaacacaatacaga |
279 |
Q |
| |
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||||| |||||||| |||||| |||||||| ||||| |||||||||||||| |
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|
| T |
36829633 |
atagactaagagttatgataactgaacacataatatcaaacacaatacaga |
36829683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 286
Target Start/End: Original strand, 48186674 - 48186716
Alignment:
| Q |
244 |
tgataattgaacacagaatatgaaacacaatacagataccgta |
286 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
48186674 |
tgataattgaacacaaaatatgaaacacaatacagacaccgta |
48186716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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