View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20828_high_7 (Length: 342)
Name: NF20828_high_7
Description: NF20828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20828_high_7 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 32 - 328
Target Start/End: Original strand, 44067163 - 44067459
Alignment:
| Q |
32 |
catttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaac |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44067163 |
catttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaac |
44067262 |
T |
|
| Q |
132 |
cttctgaatttatcaaaccatcaagattacttttcataacaaccgttcttgaatatttctgccatggtctaccaagatatgttttaactgaattctgaac |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44067263 |
cttctgaatttatcaaaccatcaagattacttttcataacaaccgttcttgaatgtttctgccatggtctaccaagatatgttttaaccgaattctgaac |
44067362 |
T |
|
| Q |
232 |
cgctttcaaatcatttgcagcggttatacggcagttatgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttc |
328 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44067363 |
cgctttcaaatcatttgcagtggttatacggcagttatgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttc |
44067459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 32 - 331
Target Start/End: Complemental strand, 44087946 - 44087647
Alignment:
| Q |
32 |
catttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaac |
131 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44087946 |
catttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaac |
44087847 |
T |
|
| Q |
132 |
cttctgaatttatcaaaccatcaagattacttttcataacaaccgttcttgaatatttctgccatggtctaccaagatatgttttaactgaattctgaac |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44087846 |
cttctgaatttatcaaaccatcaagattacttttcataacaaccgttcttgaatatttctgccatggtctaccaagatatgttttaactgaattctgaat |
44087747 |
T |
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| Q |
232 |
cgctttcaaatcatttgcagcggttatacggcagttatgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttctgt |
331 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44087746 |
cgctttcaaatcacttgatgcggttatacggcagttatgtattacaattccagtgttttcatttggatctgttcttccttgtgctgttacggtgttctgt |
44087647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 32 - 329
Target Start/End: Original strand, 44092664 - 44092961
Alignment:
| Q |
32 |
catttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaac |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44092664 |
catttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaac |
44092763 |
T |
|
| Q |
132 |
cttctgaatttatcaaaccatcaagattacttttcataacaaccgttcttgaatatttctgccatggtctaccaagatatgttttaactgaattctgaac |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44092764 |
cttctgaatttatcaaaccatcaagattacttttcataacaaccgttcttgaatatttctgccatggtctaccaagatatgttttaactgaattctgaat |
44092863 |
T |
|
| Q |
232 |
cgctttcaaatcatttgcagcggttatacggcagttatgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttct |
329 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44092864 |
cgctttcaaatcacttgatgcggttatacggcagttatgtattacaattccagtgttttcatttggatctgttcttccttgtgctgttacggtgttct |
44092961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 32 - 331
Target Start/End: Complemental strand, 7247 - 6948
Alignment:
| Q |
32 |
catttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaac |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7247 |
catttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaac |
7148 |
T |
|
| Q |
132 |
cttctgaatttatcaaaccatcaagattacttttcataacaaccgttcttgaatatttctgccatggtctaccaagatatgttttaactgaattctgaac |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7147 |
cttctgaatttatcaaaccatcaagattacttttcataacaaccgttcttgaatatttctgccatggtctaccaagatatgttttaactgaattctgaat |
7048 |
T |
|
| Q |
232 |
cgctttcaaatcatttgcagcggttatacggcagttatgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttctgt |
331 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7047 |
cgctttcaaatcacttgatgcggttatacggcagttatgtattacaattccagtgttttcatttggatctgttcttccttgtgctgttacggtgttctgt |
6948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 8767322 - 8767261
Alignment:
| Q |
146 |
aaaccatcaagattacttttcataacaaccgttcttgaatatttctgccatggtctaccaag |
207 |
Q |
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|||||||||||| | ||||||| | |||||||||||||||||| ||||| ||||||||||| |
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| T |
8767322 |
aaaccatcaagaacagttttcatgaaaaccgttcttgaatatttttgccacggtctaccaag |
8767261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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