View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20829_high_1 (Length: 451)
Name: NF20829_high_1
Description: NF20829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20829_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 14220299 - 14219879
Alignment:
| Q |
1 |
gcagagttttttagcgtcgagccaaagtgatttggtggattgttgaattgttcgatgtggtgggtagattattatctggtatagtcttgtcgctgacagt |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14220299 |
gcagagttttttagcgtcgagtcaaagtgatttggtggattgttgaattgttcaatgtggtgggttttttattatctggtatagtcttgtcgctgacagt |
14220200 |
T |
|
| Q |
101 |
atcttcggatcaggagtggtagcacttctgatggtttgctgatgggggtgtttattggggatattattatgtagcatctctcagtctagctagggagtat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14220199 |
atcttcggatcaggagtggtagcacttctgatggtttgctgatgggggtgtttattggggatattattatgtagcatctctcagtctagctagggagtat |
14220100 |
T |
|
| Q |
201 |
tcgagtaacgtggatcggtatgttttttgatcaaaggaaaggaactcaagtaagcaaatggtacatagtcatctgatatgtaatcaaattaactcagcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14220099 |
tcgagtaacgtggatcggtatgttttttgatcaaaggaaaggaactcaagtaagcaaatggtacatagtcatctgatatgtaatcaaattaactcagcaa |
14220000 |
T |
|
| Q |
301 |
tgagctcatcgtcggaggcttgcataagatctcagtttaatgcatctgttgatagttagcaggttagtcaatgtttagatcgcttgcagttgctggaagg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14219999 |
tgagctcatcgtcggaggcttgcataagatctcagtttaatgcatctgttgataattagcaggttagtccatgtttagatcgcttgcagttgctggaagg |
14219900 |
T |
|
| Q |
401 |
tgatctcttgtttgtcaaccg |
421 |
Q |
| |
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||||||||||||||||||||| |
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| T |
14219899 |
tgatctcttgtttgtcaaccg |
14219879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 309 - 419
Target Start/End: Complemental strand, 14229989 - 14229879
Alignment:
| Q |
309 |
tcgtcggaggcttgcataagatctcagtttaatgcatctgttgatagttagcaggttagtcaatgtttagatcgcttgcagttgctggaaggtgatctct |
408 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||| || ||||||||||| |||| ||||| ||||||| |||||||| |||||||| |
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| T |
14229989 |
tcgtcggaggattgcataagatctcagtttaatgaatctgttgatagtaagtaggttagtcaaagttttgatcgtttgcagtagctggaagttgatctct |
14229890 |
T |
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| Q |
409 |
tgtttgtcaac |
419 |
Q |
| |
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||||||||||| |
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| T |
14229889 |
tgtttgtcaac |
14229879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 121 - 294
Target Start/End: Complemental strand, 14230240 - 14230071
Alignment:
| Q |
121 |
agcacttctgatggtttgctgatggg-ggtgtttattggggatattattatgtagcatctctcagtctagctagggagtattcgagtaacgtggatcggt |
219 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||| | |||||| ||||||||| ||||||||||||||||| ||||||| || |
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| T |
14230240 |
agcagttctgatggtttgctgatgcaaggtgtttattggggatat------ggagcatcagtcagtctagacagggagtattcgagtaatgtggatcagt |
14230147 |
T |
|
| Q |
220 |
a-tgttttttgatcaaaggaaaggaactcaagtaagcaaatggtacatagtcatctgatatgtaatcaaattaact |
294 |
Q |
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| | |||||| ||||||||||||||||||| || |||||||| ||||| |||| |||||||||||||||||||||| |
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| T |
14230146 |
aatttttttttatcaaaggaaaggaactcatgtcagcaaatgttacatggtcacctgatatgtaatcaaattaact |
14230071 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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