View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20829_high_10 (Length: 323)
Name: NF20829_high_10
Description: NF20829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20829_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 53 - 275
Target Start/End: Complemental strand, 6871539 - 6871317
Alignment:
| Q |
53 |
ccacagacctgtgtaaaaagggaaaactaacatcagccactataaaatttacgaagttttttcattattcacaaaaccaaaattaaatgaattttcaatt |
152 |
Q |
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| T |
6871539 |
ccacagacctgtgtaaaaagggaaaactaacatcagccactataaaatttacgaagttttttcattattcacaaaaccaaaattaaatgaattttcaatt |
6871440 |
T |
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| Q |
153 |
gtaatacatatatctttaaaataaaattctgagtttctcaaaatcaaagcctaacaattaattatggggtgatgtggttttcactgctgcacatttaatt |
252 |
Q |
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| T |
6871439 |
gtaatacatatatctttaaaataaaattctgagtttctcaaaatcaaagcctaacaattaattatggggtgatgtggttttcactactgcacatttaatt |
6871340 |
T |
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| Q |
253 |
aacggcatgccaaatttatttta |
275 |
Q |
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| T |
6871339 |
aacggcatgccaaatttatttta |
6871317 |
T |
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