View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20829_high_2 (Length: 370)
Name: NF20829_high_2
Description: NF20829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20829_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 41759773 - 41760125
Alignment:
| Q |
1 |
atcacatggtgaagtctaaccttttccactgaacacaataagcacatagtattatcaattgaaaagtctttaaattattttcagaaaccaacaaaaataa |
100 |
Q |
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| T |
41759773 |
atcacatggtgaagtctaaccttttccactgaacacaataagcacatagtattatcaattgaaatgtctttaaattattttcagaaaccaacaaaaataa |
41759872 |
T |
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| Q |
101 |
taatagaatcaccctctccagtacacaccacaccagtcaccactatatataatgaggccttcctggctttaattcaccaaaccatcatatctcactactt |
200 |
Q |
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| T |
41759873 |
taatagaatcaccctctccagta-----cacaccagtcaccactatatataatgaggccttcctggctttaattcaccaaaccatcatatctcactactt |
41759967 |
T |
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| Q |
201 |
acaatctaccaaacctcatttcattctctttctttacagagtgaacactatggacaatatgtgtcaactaaatttccaaaatatatcaactctgactcaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41759968 |
acaatctaccaaacctcatttcattctctttcttt--agagtgaacactatggacaatatgtgtcaactaaatttccaaaatatatcaacactgactcaa |
41760065 |
T |
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| Q |
301 |
gggatgaaaactcattcccatcttatgaaatttacacaaatattcatttcactatctgtg |
360 |
Q |
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| T |
41760066 |
gggatgaaaactcattcccatcttatgaaatttacacaaatattcatttcactatctgtg |
41760125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 237 - 360
Target Start/End: Original strand, 41794854 - 41794977
Alignment:
| Q |
237 |
cagagtgaacactatggacaatatgtgtcaactaaatttccaaaatatatcaactctgactcaagggatgaaaactcattcccatcttatgaaatttaca |
336 |
Q |
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|||||| |||||||||||||||||||||| | |||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
41794854 |
cagagtaaacactatggacaatatgtgtcgattaaaattccaaaatatatcaacactgactcaagggatgaaaactcattcaaatctaatgaaatttaca |
41794953 |
T |
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| Q |
337 |
caaatattcatttcactatctgtg |
360 |
Q |
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| T |
41794954 |
caaatattcatttcactatctgtg |
41794977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 41794762 - 41794831
Alignment:
| Q |
129 |
cacaccagtcaccactatatataatgaggccttcctggctttaattcaccaaaccatcatatctcactac |
198 |
Q |
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| T |
41794762 |
cacaccaatcagcactatatataatgagtcattcatgcccttaattcaccaaaccatcctatctcactac |
41794831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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