View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20829_high_3 (Length: 359)
Name: NF20829_high_3
Description: NF20829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20829_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 10318481 - 10318150
Alignment:
| Q |
1 |
gaatggaagtcagtacaaagagattcaatggttaggtgaatattttgttttaagacaatgttctggtgacactgatgctttggaaagtgagattaaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10318481 |
gaatggaagtcagtacaaagagattcaatggttaggtgaatattttgttttaagacaatgttctggtgacactgatgctttggaaagtgagattaaagaa |
10318382 |
T |
|
| Q |
101 |
cttttatctctttcacatccaaatataatggactgtctttgtggttttactgatgaggagaagaaagaatgatttctgttgatggaactgatgagcaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10318381 |
cttttatctctttcacatccaaatataatggactgtctttgtggttttactgatgaggagaagaaagaatgttttctgttgatggaactgatgagcaaaa |
10318282 |
T |
|
| Q |
201 |
cacttagcaatcatattaaagaggtttatggtccgaggaagcgattaccattcttgcttcatgtcgcggttgatattatgcttcagattgcaagaggaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10318281 |
cacttagcaatcatattaaagaggtttatggtccgaggaagcgattaccattcttgcttcatgtagcggttgatattatgcttcagattgcaagaggaat |
10318182 |
T |
|
| Q |
301 |
ggaatatattcattcaaagaaagtgtatcatg |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10318181 |
ggaatatattcattcaaagaaagtgtatcatg |
10318150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University