View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20829_high_5 (Length: 342)

Name: NF20829_high_5
Description: NF20829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20829_high_5
NF20829_high_5
[»] chr7 (9 HSPs)
chr7 (160-319)||(36221990-36222144)
chr7 (160-317)||(36217999-36218151)
chr7 (166-317)||(35938858-35939004)
chr7 (30-91)||(36221861-36221922)
chr7 (189-317)||(32727098-32727221)
chr7 (169-317)||(35976975-35977118)
chr7 (169-317)||(35998387-35998530)
chr7 (189-317)||(35946312-35946435)
chr7 (258-317)||(35951951-35952010)
[»] chr1 (2 HSPs)
chr1 (189-316)||(18125241-18125363)
chr1 (245-317)||(18117587-18117659)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 160 - 319
Target Start/End: Original strand, 36221990 - 36222144
Alignment:
Q  160 tgtgctggagttccgctggctgtcaaaatattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagat 259  Q
    |||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||     |||||||||||||||||||||||||||||||    
T  36221990 tgtgctggagttccgctggctgtcaaaacattaggaagttctctgttatcaaaatttgatttaa-----ataagtggatattcgtaagagaccatgagat 36222084  T
Q  260 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatga 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222085 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatga 36222144  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 160 - 317
Target Start/End: Original strand, 36217999 - 36218151
Alignment:
Q  160 tgtgctggagttccgctggctgtcaaaatattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagat 259  Q
    ||||||||||||||||||||||| | ||   ||||||||||||| |||||||||||||||||| ||     |||||| |||| |||||||||||||||||    
T  36217999 tgtgctggagttccgctggctgtgagaacggtaggaagttctctgttctcaaaatttgatttagat-----aagtggttatttgtaagagaccatgagat 36218093  T
Q  260 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 317  Q
     ||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  36218094 atggaatttagaacagaagaaagatgatattttacctgctttaaaattaagctatgat 36218151  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 166 - 317
Target Start/End: Complemental strand, 35939004 - 35938858
Alignment:
Q  166 ggagttccgctggctgtcaaaatattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaa 265  Q
    |||||||| |||||||| |||| ||||||||||||||| || ||||||||||||||||||     ||||||  ||| ||||||||   |||||| |||||    
T  35939004 ggagttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaat-----aagtgggaatttgtaagagattctgagatatggaa 35938910  T
Q  266 cttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 317  Q
     |||||||| ||| ||  |||||||||||||||| |||||||||||||||||    
T  35938909 tttagaacagaagcaaaatgatattttacctgcactaaaattaagctatgat 35938858  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 36221861 - 36221922
Alignment:
Q  30 ccttcgtatattttggaaggtctttcgcaagagagctatttgtatttgtttgtgaaatgggc 91  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36221861 ccttcgtatattttggaaggtctttcgcaagagagctgtttgtatttgtttgtgaaatgggc 36221922  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 317
Target Start/End: Complemental strand, 32727221 - 32727098
Alignment:
Q  189 attaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtgata 288  Q
    |||| |||||||  |||||||||||| ||||     ||||||||||||||||| || |||||   |||||| ||||| |||||||| ||||||| |||||    
T  32727221 attacgaagttccttattctcaaaatatgat-----ttaaataagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatgata 32727127  T
Q  289 ttttacctgcattaaaattaagctatgat 317  Q
    ||||||||||||| || ||||||||||||    
T  32727126 ttttacctgcattgaagttaagctatgat 32727098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 317
Target Start/End: Complemental strand, 35977118 - 35976975
Alignment:
Q  169 gttccgctggctgtcaaaatattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaactt 268  Q
    |||||||| ||||| | || ||||||||||||||| |||||||| |||||| |||       ||||||  |||||| || |||  |||||| ||||| ||    
T  35977118 gttccgctagctgtgagaacattaggaagttctctcttctcaaactttgatataagc-----aagtgggaattcgttagggactctgagatgtggaattt 35977024  T
Q  269 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 317  Q
    |||||||||||||| || ||||||||||||  |||||||||||||||||    
T  35977023 agaacaaaagaaagatggtattttacctgcgctaaaattaagctatgat 35976975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 317
Target Start/End: Complemental strand, 35998530 - 35998387
Alignment:
Q  169 gttccgctggctgtcaaaatattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaactt 268  Q
    |||||||| ||||| | || ||||||||||||||| |||||||| |||||| |||       ||||||  |||||| || |||  |||||| ||||| ||    
T  35998530 gttccgctagctgtgagaacattaggaagttctctcttctcaaactttgatataagc-----aagtgggaattcgttagggactctgagatgtggaattt 35998436  T
Q  269 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 317  Q
    |||||||||||||| || ||||||||||||  |||||||||||||||||    
T  35998435 agaacaaaagaaagatggtattttacctgcgctaaaattaagctatgat 35998387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 317
Target Start/End: Complemental strand, 35946435 - 35946312
Alignment:
Q  189 attaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtgata 288  Q
    ||||| ||||||||| |||||||| |||||| ||| |     ||||||  |||||| || |||  |||||| ||||| |||||||||||||||| |||||    
T  35946435 attagcaagttctctcttctcaaactttgatataagt-----aagtgggaattcgttagggactctgagatgtggaatttagaacaaaagaaagatgata 35946341  T
Q  289 ttttacctgcattaaaattaagctatgat 317  Q
    | ||||||||  |||||||||| ||||||    
T  35946340 tcttacctgcgctaaaattaagttatgat 35946312  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 317
Target Start/End: Complemental strand, 35952010 - 35951951
Alignment:
Q  258 atttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 317  Q
    |||||||| ||||||||| |||||| |||||||||||||||  | |||||||||||||||    
T  35952010 atttggaatttagaacaacagaaagatgatattttacctgccctgaaattaagctatgat 35951951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 316
Target Start/End: Complemental strand, 18125363 - 18125241
Alignment:
Q  189 attaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtgata 288  Q
    |||||||||||| ||||||||||||||||||||||||  |     |||||||| ||||||||   |||| | ||||| ||| ||||  | |||| |||||    
T  18125363 attaggaagttccctattctcaaaatttgatttaaataca-----tggatatttgtaagagattctgagctgtggaatttaaaacagcaaaaagatgata 18125269  T
Q  289 ttttacctgcattaaaattaagctatga 316  Q
    ||||||||||| ||||||| ||||||||    
T  18125268 ttttacctgcactaaaattgagctatga 18125241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 18117659 - 18117587
Alignment:
Q  245 aagagaccatgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 317  Q
    |||||||  |||||| ||||  |||||||||||| ||  |||||||||||||||| |||||||||||||||||    
T  18117659 aagagactctgagatgtggactttagaacaaaagcaaaatgatattttacctgcactaaaattaagctatgat 18117587  T

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