View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20829_high_6 (Length: 342)
Name: NF20829_high_6
Description: NF20829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20829_high_6 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 415856 - 416186
Alignment:
| Q |
1 |
aaatttggattcaaaattaggattgcagaatagttttttagtttcatagtatttgaatgcctttaattttggatttagaaattaatatttttgtgagttc |
100 |
Q |
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| T |
415856 |
aaatttggattcaaaattaggattgcagaatagttttttagtttcataggatttgaatgcctttaattttggatttagaaattaatatttttgtgagttc |
415955 |
T |
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| Q |
101 |
taatccaacgtttcttgtatcatgctattataagctctattattagaaaatttaacagtgttttaacatatctttgtcgcttgcaggataatgtccggtg |
200 |
Q |
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| T |
415956 |
taatccaacgtttcttgtatcatgctattataagctctattattagaaaatttaacagcgttttaacatatctttgtcgcttgcaggataatgtccggtg |
416055 |
T |
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| Q |
201 |
tatggttcgaaaatttcttgaatttaccatcaataattacaagaactgtacagaaccaatatcaatactacaggattttcgattatctctggtaagaata |
300 |
Q |
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| T |
416056 |
tatggttcgaaaatttcttgaatttaccatcattaattacaagaactgtacagaacctatatcaatactacaggattttcaattatctctggtaagaata |
416155 |
T |
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| Q |
301 |
ttttcttgattttccttctatttcgtccttt |
331 |
Q |
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| T |
416156 |
ttttcttgatttttcttctatttcgtccttt |
416186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 158 - 306
Target Start/End: Original strand, 21573294 - 21573443
Alignment:
| Q |
158 |
gtgttttaacatatctttgtcgc-ttgcaggataatgtccggtgtatggttcgaaaatttcttgaatttaccatcaataattacaagaactgtacagaac |
256 |
Q |
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| T |
21573294 |
gtgttttaacatatctttgtgacattgcaggataatgtcaagagtatggctggaaaatttcttgaatatacgatgaacaattacaagatctgtacagaac |
21573393 |
T |
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| Q |
257 |
caatatcaatactacaggattttcgattatctctggtaagaatattttct |
306 |
Q |
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| T |
21573394 |
cagtatcaatattacaggcctttcaattatctctggtcagaatattttct |
21573443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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