View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20829_high_8 (Length: 335)
Name: NF20829_high_8
Description: NF20829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20829_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 93 - 281
Target Start/End: Complemental strand, 15931452 - 15931265
Alignment:
| Q |
93 |
aacaaaacaaatggtgtgttgttaattgtcgtgcgcaaaggatgtcgcccacacttataatattgaacttagtagaaaccattgctttgtatttgctaat |
192 |
Q |
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| T |
15931452 |
aacaaaacaaatggtgtgttgttaattgtcgtgcgcaaaggatgtcgcccactcttataatattga-cttagtagaaaccattgctttgtatttgctaat |
15931354 |
T |
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| Q |
193 |
tctttgttgggtacctgaaactagtgtgggattgtagcacttttctggtgctcaaatttcaagctagaatggtttctgtttctgtttcc |
281 |
Q |
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| T |
15931353 |
tctttgttgggtacctgaaactagtgtgggattgtagcacttttctggtgctcaaatttcaagctagaatggtttccgtttctgtttcc |
15931265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 14292261 - 14292334
Alignment:
| Q |
192 |
ttctttgttgggtacctgaaactagtgtgggattgtagcacttttctggtgctcaaatttcaagctagaatggtt |
266 |
Q |
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| T |
14292261 |
ttctttgttgggtgcctgaaactggtgttggattgtgagacttttctggt-ttcaaatttcaagctagagtggtt |
14292334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 261
Target Start/End: Original strand, 14285059 - 14285161
Alignment:
| Q |
158 |
aacttagtagaaaccattgctttgtatttgcta--attctttgttgggtacctgaaactagtgtgggattgtagcacttttctggtgctcaaatttcaag |
255 |
Q |
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| T |
14285059 |
aacttagtagaaaccattgctccatattttctattcttctttgttgggttcctgaaactagtgctggattg-ag-acttttctggt-ttcaagtttcaag |
14285155 |
T |
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| Q |
256 |
ctagaa |
261 |
Q |
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| T |
14285156 |
ctagaa |
14285161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 263
Target Start/End: Original strand, 15011686 - 15011783
Alignment:
| Q |
164 |
gtagaaaccattgctttgtatttgctaattctttgttgggtacctgaaactagtgtgggattgt-agcacttttctggtgctcaaatttcaagctagaat |
262 |
Q |
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| T |
15011686 |
gtagaaaccattgctctatattt--ttattatttgttgggtacctgaaactagtgctggattgtgatgctttttctggt-ttcaaatttcaagctagaat |
15011782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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