View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2082_low_1 (Length: 454)

Name: NF2082_low_1
Description: NF2082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2082_low_1
NF2082_low_1
[»] chr4 (15 HSPs)
chr4 (1-431)||(54147480-54147913)
chr4 (89-216)||(16870567-16870700)
chr4 (232-303)||(16870654-16870724)
chr4 (385-431)||(16870777-16870823)
chr4 (205-299)||(42265400-42265492)
chr4 (284-383)||(54147827-54147927)
chr4 (89-131)||(16870396-16870438)
chr4 (264-326)||(54147869-54147933)
chr4 (343-383)||(16870798-16870838)
chr4 (383-423)||(24225506-24225546)
chr4 (344-404)||(16870705-16870766)
chr4 (383-422)||(42265453-42265492)
chr4 (386-431)||(16870685-16870729)
chr4 (386-423)||(42265426-42265462)
chr4 (303-331)||(7259335-7259363)
[»] chr7 (36 HSPs)
chr7 (17-238)||(21813696-21813918)
chr7 (344-423)||(44338338-44338416)
chr7 (89-238)||(11828578-11828721)
chr7 (89-216)||(46963841-46963974)
chr7 (328-415)||(15623052-15623139)
chr7 (232-303)||(15623104-15623174)
chr7 (324-415)||(15623145-15623236)
chr7 (201-319)||(21813819-21813940)
chr7 (344-415)||(44338430-44338500)
chr7 (232-319)||(44338287-44338375)
chr7 (222-303)||(11828575-11828656)
chr7 (232-303)||(15623197-15623267)
chr7 (159-269)||(11828578-11828688)
chr7 (89-216)||(44338205-44338333)
chr7 (232-319)||(44338379-44338467)
chr7 (232-308)||(15623006-15623081)
chr7 (232-319)||(44338471-44338560)
chr7 (344-392)||(44338522-44338570)
chr7 (50-181)||(6530511-6530643)
chr7 (232-330)||(46963788-46963887)
chr7 (347-415)||(15623238-15623306)
chr7 (385-431)||(15623099-15623145)
chr7 (174-247)||(21813823-21813896)
chr7 (386-423)||(21813850-21813887)
chr7 (385-431)||(15623192-15623238)
chr7 (385-431)||(44338500-44338546)
chr7 (386-431)||(44338318-44338362)
chr7 (386-431)||(44338410-44338454)
chr7 (386-429)||(11828572-11828615)
chr7 (385-428)||(15623009-15623052)
chr7 (300-330)||(26403153-26403183)
chr7 (300-330)||(44338654-44338684)
chr7 (383-420)||(24487088-24487125)
chr7 (386-431)||(46963812-46963856)
chr7 (383-423)||(11828609-11828649)
chr7 (226-266)||(24487088-24487128)
[»] chr2 (20 HSPs)
chr2 (17-280)||(1173541-1173809)
chr2 (89-319)||(38584083-38584322)
chr2 (143-319)||(1173469-1173647)
chr2 (328-404)||(1173447-1173523)
chr2 (328-415)||(1173343-1173430)
chr2 (89-216)||(8986129-8986262)
chr2 (232-329)||(1173273-1173372)
chr2 (232-316)||(1173379-1173465)
chr2 (386-430)||(1173484-1173528)
chr2 (232-303)||(8986216-8986286)
chr2 (324-382)||(1173283-1173341)
chr2 (385-431)||(1173297-1173343)
chr2 (385-431)||(1173390-1173436)
chr2 (143-216)||(32290565-32290642)
chr2 (140-188)||(32290597-32290645)
chr2 (383-423)||(38584202-38584242)
chr2 (328-383)||(38584082-38584137)
chr2 (381-423)||(32290556-32290598)
chr2 (383-431)||(38584097-38584145)
chr2 (383-423)||(38584136-38584176)
[»] chr5 (17 HSPs)
chr5 (17-216)||(9511654-9511854)
chr5 (232-415)||(24136891-24137075)
chr5 (328-431)||(24136927-24137029)
chr5 (89-216)||(11335415-11335537)
chr5 (232-301)||(24137046-24137114)
chr5 (206-320)||(9511782-9511899)
chr5 (222-329)||(11335361-11335469)
chr5 (386-431)||(11335385-11335430)
chr5 (383-428)||(24136919-24136964)
chr5 (371-423)||(24136876-24136928)
chr5 (170-249)||(9511777-9511856)
chr5 (89-136)||(24136725-24136772)
chr5 (232-300)||(9511777-9511845)
chr5 (385-424)||(24137075-24137114)
chr5 (389-423)||(9511811-9511845)
chr5 (328-382)||(11335371-11335425)
chr5 (232-279)||(24136808-24136855)
[»] chr3 (13 HSPs)
chr3 (232-330)||(42530736-42530835)
chr3 (89-249)||(50295478-50295636)
chr3 (328-415)||(46692012-46692099)
chr3 (225-319)||(46692045-46692141)
chr3 (171-317)||(50295527-50295677)
chr3 (385-430)||(46692060-46692105)
chr3 (372-423)||(42530722-42530773)
chr3 (324-380)||(50295620-50295677)
chr3 (232-303)||(46691970-46692041)
chr3 (160-199)||(2593560-2593599)
chr3 (386-431)||(42530767-42530811)
chr3 (385-429)||(46691967-46692012)
chr3 (383-415)||(50295554-50295586)
[»] chr8 (19 HSPs)
chr8 (344-423)||(20242015-20242093)
chr8 (344-423)||(20250974-20251052)
chr8 (344-415)||(20242107-20242177)
chr8 (232-319)||(20241964-20242052)
chr8 (232-319)||(20251015-20251103)
chr8 (89-216)||(20241882-20242010)
chr8 (232-319)||(20242056-20242144)
chr8 (232-319)||(20250923-20251011)
chr8 (89-216)||(20251057-20251185)
chr8 (232-319)||(20242148-20242237)
chr8 (344-392)||(20242199-20242247)
chr8 (344-392)||(20250913-20250960)
chr8 (385-431)||(20242177-20242223)
chr8 (386-431)||(20241995-20242039)
chr8 (386-431)||(20242087-20242131)
chr8 (386-431)||(20250936-20250980)
chr8 (386-431)||(20251028-20251072)
chr8 (300-330)||(20242331-20242361)
chr8 (300-330)||(20250799-20250829)
[»] chr6 (22 HSPs)
chr6 (328-422)||(21862276-21862371)
chr6 (323-415)||(28063589-28063679)
chr6 (343-404)||(13167536-13167597)
chr6 (232-303)||(21862241-21862311)
chr6 (385-431)||(21862270-21862316)
chr6 (224-317)||(21862043-21862137)
chr6 (344-415)||(21862102-21862173)
chr6 (232-302)||(21862144-21862213)
chr6 (232-320)||(28063528-28063618)
chr6 (264-319)||(28063622-28063678)
chr6 (387-431)||(28063634-28063678)
chr6 (328-404)||(21862179-21862259)
chr6 (345-403)||(13167445-13167502)
chr6 (385-431)||(21862173-21862219)
chr6 (386-426)||(10741529-10741569)
chr6 (397-431)||(13167527-13167561)
chr6 (143-188)||(13167367-13167412)
chr6 (386-431)||(21862082-21862126)
chr6 (95-136)||(28063772-28063813)
chr6 (144-212)||(13097907-13097975)
chr6 (232-264)||(13167579-13167611)
chr6 (232-268)||(21862335-21862371)
[»] chr1 (15 HSPs)
chr1 (89-238)||(2072369-2072519)
chr1 (89-238)||(2075899-2076049)
chr1 (328-404)||(15630001-15630076)
chr1 (385-431)||(15629944-15629990)
chr1 (232-326)||(15629924-15630019)
chr1 (237-319)||(15630023-15630107)
chr1 (386-431)||(15630036-15630081)
chr1 (222-295)||(19825091-19825164)
chr1 (223-305)||(2072364-2072446)
chr1 (223-305)||(2075894-2075976)
chr1 (102-230)||(19825094-19825223)
chr1 (383-423)||(19825117-19825157)
chr1 (206-269)||(15630044-15630107)
chr1 (174-238)||(15630044-15630108)
chr1 (391-423)||(15630075-15630107)
[»] scaffold0499 (2 HSPs)
scaffold0499 (144-243)||(7233-7329)
scaffold0499 (387-416)||(7304-7333)


Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 54147480 - 54147913
Alignment:
Q  1 ttggcttgattcattgtggttcatattggttcgtcaatttgtctttgcatggttcgtttggttcagtttggtttgatttggattcgctttcaatttgttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||    
T  54147480 ttggcttgattcattgtggttcatattggttcgtcaatttgtctttgcatggttcgtttggttcagtttggtttgatttggattcattttgaatttgttt 54147579  T
Q  101 ggttgttaggtgagtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatt----tgtttgtttgatgagtcaggtgctc 196  Q
    |||||||||||||||||||||||| ||||||||||| |  | |||||||||| |||||||||||||  |||    |||||||||| || |||| ||||||    
T  54147580 ggttgttaggtgagtcaagatagtcctcacaattggtt--tgtttgtttggtaggtcaagtgctcactattggattgtttgtttggtgggtcaagtgctc 54147677  T
Q  197 acactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaattt 296  Q
    | | |||  ||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54147678 ataatttgtttgtttggtgagtcaggtgctcacactttagttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaattt 54147777  T
Q  297 ggtttc--tcccccttttgattcttttgattgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgt 394  Q
    ||||||  ||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  54147778 ggtttctttcccccttttgattcttctgattgattgtttggtgggtcgagtgctcataatttggtttcttct-ccccttttgattcttcaagttggttgt 54147876  T
Q  395 ttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    |||||||||||||||||||||||||||||||||||||    
T  54147877 ttggtgagtcgagtgctcacaatttggtttcttctcc 54147913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 16870567 - 16870700
Alignment:
Q  89 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat------attatttgtttggtgggtcaagtgctcataatttgtttgtttga 182  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| |       || ||||||||||||||||||  ||||||||||| |||||||     
T  16870567 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgttcatttgtttgtttggtgggtcaagaactcataatttgcttgtttgg 16870666  T
Q  183 tgagtcaggtgctcacactttagttgtttggtga 216  Q
    ||||||   | |||||||||| ||||||||||||    
T  16870667 tgagtcgatttctcacactttggttgtttggtga 16870700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 16870654 - 16870724
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 303  Q
    |||| |||||||||||||| | |||||||| |||||||||||||||||  | ||||||||||||||||||||    
T  16870654 tttgcttgtttggtgagtcgatttctcacactttggttgtttggtgagcat-gtgctcacaatttggtttct 16870724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 431
Target Start/End: Original strand, 16870777 - 16870823
Alignment:
Q  385 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||    
T  16870777 atttggttgtttcgtgagtcgagtgctcataatttggtttcttctcc 16870823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 42265400 - 42265492
Alignment:
Q  205 gttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt 299  Q
    |||||||||||| | | ||||||||  ||||||||||||||||||| ||| |||||| |||||||||||||||| |   ||||||||||||||||    
T  42265400 gttgtttggtga-tcaagtgctcactgtttggttgtttggtgagtcgagt-ctcacaatttggttgtttggtgattcaagtgctcacaatttggt 42265492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 284 - 383
Target Start/End: Original strand, 54147827 - 54147927
Alignment:
Q  284 gtgctcacaatttggtttctcc--cccttttgattcttttgattgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattct 381  Q
    ||||||| |||||||||||| |  ||||||||||||||    ||| |||||||||| ||  |||||||| ||||||||||||||| ||||||||||||||    
T  54147827 gtgctcataatttggtttcttctccccttttgattcttcaagttggttgtttggtgagtcgagtgctcacaatttggtttcttct-ccccttttgattct 54147925  T
Q  382 tc 383  Q
    ||    
T  54147926 tc 54147927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 16870396 - 16870438
Alignment:
Q  89 ttcaatttgtttggttgttaggtgagtcaagatagtgctcaca 131  Q
    ||||||||||||||||||| |||||||||| ||||||||||||    
T  16870396 ttcaatttgtttggttgtttggtgagtcaaaatagtgctcaca 16870438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 264 - 326
Target Start/End: Original strand, 54147869 - 54147933
Alignment:
Q  264 ttggttgtttggtgagtttggtgctcacaatttggtttctcc--cccttttgattcttttgattg 326  Q
    |||||||||||||||||   |||||||||||||||||||| |  |||||||||||||| ||||||    
T  54147869 ttggttgtttggtgagtcgagtgctcacaatttggtttcttctccccttttgattcttctgattg 54147933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 383
Target Start/End: Original strand, 16870798 - 16870838
Alignment:
Q  343 agtgctcataatttggtttcttctcccccttttgattcttc 383  Q
    |||||||||||||||||||||||||||| |||| |||||||    
T  16870798 agtgctcataatttggtttcttctccccttttttattcttc 16870838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 24225506 - 24225546
Alignment:
Q  383 caatttggttgtttggtgagtcgagtgctcacaatttggtt 423  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  24225506 caatttggttgtttggtgaatcgagtgcttacaatttggtt 24225546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 404
Target Start/End: Original strand, 16870705 - 16870766
Alignment:
Q  344 gtgctcataatttggtttcttctcccccttttg--attcttcaatttggttgtttggtgagtc 404  Q
    ||||||| ||||||||||||||| |||||||||  ||||||||||||||||| || |||||||    
T  16870705 gtgctcacaatttggtttcttct-ccccttttgatattcttcaatttggttgattagtgagtc 16870766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 422
Target Start/End: Original strand, 42265453 - 42265492
Alignment:
Q  383 caatttggttgtttggtgagtcgagtgctcacaatttggt 422  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  42265453 caatttggttgtttggtgattcaagtgctcacaatttggt 42265492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 16870685 - 16870729
Alignment:
Q  386 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    ||||||||||||||||| |  |||||||||||||||||||||||||    
T  16870685 tttggttgtttggtgag-catgtgctcacaatttggtttcttctcc 16870729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Original strand, 42265426 - 42265462
Alignment:
Q  386 tttggttgtttggtgagtcgagtgctcacaatttggtt 423  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  42265426 tttggttgtttggtgagtcgagt-ctcacaatttggtt 42265462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 331
Target Start/End: Complemental strand, 7259363 - 7259335
Alignment:
Q  303 tcccccttttgattcttttgattgattgt 331  Q
    |||||||||||||||||||||||||||||    
T  7259363 tcccccttttgattcttttgattgattgt 7259335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 21813696 - 21813918
Alignment:
Q  17 tggttcatattggttcgtcaatttgtctttgcatggttcgtttggttcagtttggtttgatttggattcgct---ttcaatttgtttggttgttaggtga 113  Q
    |||||| ||||||||||||||||||||||||  ||||||||||| ||||||| ||||||||||||||||| |   |||||||||||||||||||||| ||    
T  21813696 tggttcgtattggttcgtcaatttgtctttgtctggttcgtttgattcagttcggtttgatttggattcggttggttcaatttgtttggttgttaggcga 21813795  T
Q  114 gtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttgg 213  Q
    ||||||||| | |||||||||||   |||||||||||||| |||||||||||| | |||| ||||||| ||||||  ||||||||| ||| |||| ||||    
T  21813796 gtcaagatattcctcacaattgg--tttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggttgcttgg 21813893  T
Q  214 tgaattaggtgctcacactttggtt 238  Q
    |||| || || | |||| |||||||    
T  21813894 tgaaataagtacccacaatttggtt 21813918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 344 - 423
Target Start/End: Original strand, 44338338 - 44338416
Alignment:
Q  344 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 423  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||    
T  44338338 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtggtttggtgagtcgagttctcacactttggtt 44338416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 238
Target Start/End: Complemental strand, 11828721 - 11828578
Alignment:
Q  89 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 188  Q
    ||||||||||||| ||||  | |||| ||||||||||||||||||| | ||      ||||||||||||||||||||| |||||| |||| || ||||||    
T  11828721 ttcaatttgtttgattgtaggatgagacaagatagtgctcacaatttgtta------gtttggtgggtcaagtgctcacaatttggttgtctggtgagtc 11828628  T
Q  189 aggtgctcacactttagttgtttggtgaattaggtgctcacactttggtt 238  Q
     |||||||||| ||| |||||||||||| ||| || |||||| |||||||    
T  11828627 gggtgctcacattttggttgtttggtgagttaagtactcacaatttggtt 11828578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 46963974 - 46963841
Alignment:
Q  89 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat------attatttgtttggtgggtcaagtgctcataatttgtttgtttga 182  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| |       || ||||||||||||||||||  ||||||||||| |||||||     
T  46963974 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgttcatttgtttgtttggtgggtcaagaactcataatttgcttgtttgg 46963875  T
Q  183 tgagtcaggtgctcacactttagttgtttggtga 216  Q
    ||||||   | |||||||||| ||||||||||||    
T  46963874 tgagtcgatttctcacactttggttgtttggtga 46963841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 328 - 415
Target Start/End: Complemental strand, 15623139 - 15623052
Alignment:
Q  328 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 415  Q
    |||||||||| ||  |||||||| ||||| |||||||||||||||  |||||||||||||||||||||||||||||| ||| ||||||    
T  15623139 ttgtttggtgagttgagtgctcacaattttgtttcttctccccctactgattcttcaatttggttgtttggtgagtctagttctcaca 15623052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 15623174 - 15623104
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 303  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||    
T  15623174 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagttgagtgctcacaattttgtttct 15623104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 324 - 415
Target Start/End: Complemental strand, 15623236 - 15623145
Alignment:
Q  324 ttgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 415  Q
    |||||||||||||| ||  |||||||| ||||| |||||||||||||||   ||||||||||||||||||||||||||||| ||| ||||||    
T  15623236 ttgattgtttggtgagttgagtgctcacaattttgtttcttctccccctaccgattcttcaatttggttgtttggtgagtctagttctcaca 15623145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 319
Target Start/End: Original strand, 21813819 - 21813940
Alignment:
Q  201 tttagttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttgg-- 298  Q
    |||| ||||||||||| | | ||||||||||||||||||||||||||||| ||| |||||| |||||||| |||||||  |  || | ||||||||||      
T  21813819 tttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggttgcttggtgaaataagtacccacaatttggtt 21813918  T
Q  299 -tttctcccccttttgattctt 319  Q
     |||||||||||||||||||||    
T  21813919 ttttctcccccttttgattctt 21813940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 344 - 415
Target Start/End: Original strand, 44338430 - 44338500
Alignment:
Q  344 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 415  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  44338430 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggttgtttggtgagtagagttctcaca 44338500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 232 - 319
Target Start/End: Original strand, 44338287 - 44338375
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 319  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  44338287 tttgcttgtttggtgagtcgagttctcacattttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 44338375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 303
Target Start/End: Complemental strand, 11828656 - 11828575
Alignment:
Q  222 gtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 303  Q
    ||||||||| ||||||||| |||||||||  || ||||||||||||||||||||||||||  || |||||||||||||||||    
T  11828656 gtgctcacaatttggttgtctggtgagtcgggtgctcacattttggttgtttggtgagttaagtactcacaatttggtttct 11828575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 15623267 - 15623197
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 303  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||  ||||||||||||| ||||||    
T  15623267 tttggttgtttggtgagtctagttctcaca-tttgattgtttggtgagttgagtgctcacaattttgtttct 15623197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 11828688 - 11828578
Alignment:
Q  159 agtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctc 258  Q
    |||||||| |||||||| ||||| || |||| ||||||||| ||| ||||| |||||| |  |||||||||| ||||||||||||||||||  ||| |||    
T  11828688 agtgctcacaatttgttagtttggtgggtcaagtgctcacaatttggttgtctggtgagtcgggtgctcacattttggttgtttggtgagttaagtactc 11828589  T
Q  259 acattttggtt 269  Q
    ||| |||||||    
T  11828588 acaatttggtt 11828578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 44338205 - 44338333
Alignment:
Q  89 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 186  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| | |   |  ||||||||||||||| ||  ||||||||||| ||||||| ||||    
T  44338205 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtc-agcactcataatttgcttgtttggtgag 44338303  T
Q  187 tcaggtgctcacactttagttgtttggtga 216  Q
    ||  || |||||| ||| ||||||||||||    
T  44338304 tcgagttctcacattttggttgtttggtga 44338333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 319
Target Start/End: Original strand, 44338379 - 44338467
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 319  Q
    |||||| |||||||||||| |||||||||| |||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  44338379 tttggtggtttggtgagtcgagttctcacactttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 44338467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 15623081 - 15623006
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttctccccc 308  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||   |||||||| ||| ||||||| ||||    
T  15623081 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagtcgtgtgctcacgattcggtttcttcccc 15623006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 319
Target Start/End: Original strand, 44338471 - 44338560
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattctt 319  Q
    ||||||||||||||||||  |||||||||| ||||||||| ||||||||   ||||||||||||||||   ||||||||||||||||||||    
T  44338471 tttggttgtttggtgagtagagttctcaca-tttggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttttgattctt 44338560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 392
Target Start/End: Original strand, 44338522 - 44338570
Alignment:
Q  344 gtgctcataatttggtttcttctcccccttttgattcttcaatttggtt 392  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44338522 gtgctcacaatttggtttcttctcccccttttgattcttcaatttggtt 44338570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 181
Target Start/End: Original strand, 6530511 - 6530643
Alignment:
Q  50 tggttcgtttggttcagtttggtttgatttggattcgcttt---caatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattatttg 146  Q
    |||||| |||||||| |||  |||||||||||||||| |||   ||||||||||| ||||| ||||||||||||||||  ||||||||||   || | ||    
T  6530511 tggttcatttggttccgttcagtttgatttggattcgttttgttcaatttgtttgattgttgggtgagtcaagatagtattcacaattgg--tttgtctg 6530608  T
Q  147 tttggtgggtcaagtgctcataatttgtttgtttg 181  Q
    ||||||| ||||| || ||| |||||| |||||||    
T  6530609 tttggtgagtcaaatgttcacaatttggttgtttg 6530643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 46963887 - 46963788
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattcttttgattgatt 329  Q
    |||| |||||||||||||| | |||||||| |||||||||||||||||  | ||||||||||||||||||||   |||||||| |||||| | |||||||    
T  46963887 tttgcttgtttggtgagtcgatttctcacactttggttgtttggtgagcat-gtgctcacaatttggtttcttctcccctttttattcttctcattgatt 46963789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 15623306 - 15623238
Alignment:
Q  347 ctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 415  Q
    |||| ||||||||||||||||||| |  || ||||||||||||||||||||||||||| ||| ||||||    
T  15623306 ctcacaatttggtttcttctccccgtactggttcttcaatttggttgtttggtgagtctagttctcaca 15623238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 431
Target Start/End: Complemental strand, 15623145 - 15623099
Alignment:
Q  385 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||    
T  15623145 atttggttgtttggtgagttgagtgctcacaattttgtttcttctcc 15623099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 21813823 - 21813896
Alignment:
Q  174 tttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtga 247  Q
    |||||||| ||||||| ||||||||||||| |||||||||||| |   ||||||||| |||||||| |||||||    
T  21813823 tttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggttgcttggtga 21813896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 423
Target Start/End: Original strand, 21813850 - 21813887
Alignment:
Q  386 tttggttgtttggtgagtcgagtgctcacaatttggtt 423  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21813850 tttggttgtttggtgagtcgagtgctcacaatttggtt 21813887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 431
Target Start/End: Complemental strand, 15623238 - 15623192
Alignment:
Q  385 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||||    
T  15623238 atttgattgtttggtgagttgagtgctcacaattttgtttcttctcc 15623192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 431
Target Start/End: Original strand, 44338500 - 44338546
Alignment:
Q  385 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    |||||||||| |||||||| | |||||||||||||||||||||||||    
T  44338500 atttggttgtctggtgagtagtgtgctcacaatttggtttcttctcc 44338546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 44338318 - 44338362
Alignment:
Q  386 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  44338318 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc 44338362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 44338410 - 44338454
Alignment:
Q  386 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  44338410 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc 44338454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 429
Target Start/End: Complemental strand, 11828615 - 11828572
Alignment:
Q  386 tttggttgtttggtgagtcgagtgctcacaatttggtttcttct 429  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||    
T  11828615 tttggttgtttggtgagttaagtactcacaatttggtttcttct 11828572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 428
Target Start/End: Complemental strand, 15623052 - 15623009
Alignment:
Q  385 atttggttgtttggtgagtcgagtgctcacaatttggtttcttc 428  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||    
T  15623052 atttggttgtttggtgagtcgtgtgctcacgattcggtttcttc 15623009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 330
Target Start/End: Original strand, 26403153 - 26403183
Alignment:
Q  300 ttctcccccttttgattcttttgattgattg 330  Q
    |||||||||||||||||||||||||||||||    
T  26403153 ttctcccccttttgattcttttgattgattg 26403183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 330
Target Start/End: Original strand, 44338654 - 44338684
Alignment:
Q  300 ttctcccccttttgattcttttgattgattg 330  Q
    |||||||||||||||||||||||||||||||    
T  44338654 ttctcccccttttgattcttttgattgattg 44338684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 420
Target Start/End: Complemental strand, 24487125 - 24487088
Alignment:
Q  383 caatttggttgtttggtgagtcgagtgctcacaatttg 420  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  24487125 caatttggttgtttggtgagtcaagttctcacaatttg 24487088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 46963856 - 46963812
Alignment:
Q  386 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    ||||||||||||||||| |  |||||||||||||||||||||||||    
T  46963856 tttggttgtttggtgag-catgtgctcacaatttggtttcttctcc 46963812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 423
Target Start/End: Complemental strand, 11828649 - 11828609
Alignment:
Q  383 caatttggttgtttggtgagtcgagtgctcacaatttggtt 423  Q
    |||||||||||| |||||||||| ||||||||| |||||||    
T  11828649 caatttggttgtctggtgagtcgggtgctcacattttggtt 11828609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 24487128 - 24487088
Alignment:
Q  226 tcacactttggttgtttggtgagtctagttctcacattttg 266  Q
    ||||| ||||||||||||||||||| |||||||||| ||||    
T  24487128 tcacaatttggttgtttggtgagtcaagttctcacaatttg 24487088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 1173809 - 1173541
Alignment:
Q  17 tggttcatattggttcgtcaatttgtctttgcatggttcgtttggttcagtttggtttgatttggattcgctt---tcaatttgtttggttgttaggtga 113  Q
    |||||||||| ||||| ||||||||| || || ||| ||||||||||  |||  ||||||||||| |||| ||   | ||||||||||||||||||||||    
T  1173809 tggttcatatgggttcatcaatttgttttcgcttggctcgtttggtttggttcagtttgatttggtttcgtttgattaaatttgtttggttgttaggtga 1173710  T
Q  114 gtcaagatagtgctcacaattggata--ttatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgttt 211  Q
    ||||||||||| |||| |||||| |   || ||||||||||||||||||||||||||||||||||||||| || |||  ||||||| | |||  ||||||    
T  1173709 gtcaagatagttctcaaaattggtttgtttgtttgtttggtgggtcaagtgctcataatttgtttgtttggtgggtcgagtgctcataatttgtttgttt 1173610  T
Q  212 ggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagt 280  Q
    ||||| |   || |||| | ||||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  1173609 ggtgagtcgagtactcatattttggttgtttggtgagtctagtgctcacatgttgtttgtttggtgagt 1173541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 319
Target Start/End: Complemental strand, 38584322 - 38584083
Alignment:
Q  89 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattat---ttgtttggtgggtcaagtgctcataatttgtttgtttgatga 185  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| | | |  |   ||||||||||||| |||  |||| |||||| ||||||| |||    
T  38584322 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaatttggtttgttcgtttgtttggtgggt-aagcactcacaatttgcttgtttggtga 38584224  T
Q  186 gtcaggtgctcacactttagttgtttggt----gaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtt 281  Q
    |||  ||||||||| ||| ||||||||||    || | | ||||||||| |||||| |||||||||||  ||| |||||| |||||||||||||||||||    
T  38584223 gtcgagtgctcacattttggttgtttggttggtgagtcaagtgctcacaatttggtagtttggtgagttaagtgctcacaatttggttgtttggtgagtt 38584124  T
Q  282 tggtgctcacaatttg---gtttctcccccttttgattctt 319  Q
       |||||||||||||    |||||||||||||||||||||    
T  38584123 aaatgctcacaatttgattttttctcccccttttgattctt 38584083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 143 - 319
Target Start/End: Complemental strand, 1173647 - 1173469
Alignment:
Q  143 tttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgttt 242  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||  || |||| | ||| |||||||||||| |   |||||||||  ||| ||||||    
T  1173647 tttgtttggtgggtcgagtgctcataatttgtttgtttggtgagtcgagtactcatattttggttgtttggtgagtctagtgctcacatgttgtttgttt 1173548  T
Q  243 ggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattctt 319  Q
    |||||||  ||  |||||| |||||||||||||||||| | ||||||||||||||||   ||||| ||||||||||||||    
T  1173547 ggtgagt-aagcgctcacactttggttgtttggtgagtctagtgctcacaatttggtttcttctcgcccttttgattctt 1173469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 328 - 404
Target Start/End: Complemental strand, 1173523 - 1173447
Alignment:
Q  328 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtc 404  Q
    |||||||||| ||  |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1173523 ttgtttggtgagtctagtgctcacaatttggtttcttctcgcccttttgattcttcaatttggttgtttggtgagtc 1173447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 328 - 415
Target Start/End: Complemental strand, 1173430 - 1173343
Alignment:
Q  328 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 415  Q
    |||||||||| ||  ||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||    
T  1173430 ttgtttggtgagtctagtgcacacaatttggtttcttctcccccttttgattattcaatttggttgtttggtgagtctagttctcaca 1173343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 8986129 - 8986262
Alignment:
Q  89 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat------attatttgtttggtgggtcaagtgctcataatttgtttgtttga 182  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| |       || ||||||||||||||||||  ||||||||||| |||||||     
T  8986129 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgttcatttgtttgtttggtgggtcaagaactcataatttgcttgtttgg 8986228  T
Q  183 tgagtcaggtgctcacactttagttgtttggtga 216  Q
    ||||||   | |||||||||| ||||||||||||    
T  8986229 tgagtcgatttctcacactttggttgtttggtga 8986262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 232 - 329
Target Start/End: Complemental strand, 1173372 - 1173273
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattcttttgattgat 328  Q
    |||||||||||||||||||||||||||||| |||| |||||| ||||||   ||||||||||||||||   ||||||||||||||||||||  |||||||    
T  1173372 tttggttgtttggtgagtctagttctcaca-tttgattgtttagtgagtcgagtgctcacaatttggtttcttctcccccttttgattcttgggattgat 1173274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 316
Target Start/End: Complemental strand, 1173465 - 1173379
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgatt 316  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||| | |||| |||||||||||   |||||||||||||||||    
T  1173465 tttggttgtttggtgagtctaattctcacattt-ggttgtttggtgagtctagtgcacacaatttggtttcttctcccccttttgatt 1173379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 1173528 - 1173484
Alignment:
Q  386 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctc 430  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  1173528 tttggttgtttggtgagtctagtgctcacaatttggtttcttctc 1173484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 8986216 - 8986286
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 303  Q
    |||| |||||||||||||| | |||||||| |||||||||||||||||  | ||||||||||||||||||||    
T  8986216 tttgcttgtttggtgagtcgatttctcacactttggttgtttggtgagcat-gtgctcacaatttggtttct 8986286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 324 - 382
Target Start/End: Complemental strand, 1173341 - 1173283
Alignment:
Q  324 ttgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattctt 382  Q
    |||||||||| ||| ||  |||||||| |||||||||||||||||||||||||||||||    
T  1173341 ttgattgtttagtgagtcgagtgctcacaatttggtttcttctcccccttttgattctt 1173283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 431
Target Start/End: Complemental strand, 1173343 - 1173297
Alignment:
Q  385 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  1173343 atttgattgtttagtgagtcgagtgctcacaatttggtttcttctcc 1173297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 431
Target Start/End: Complemental strand, 1173436 - 1173390
Alignment:
Q  385 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||    
T  1173436 atttggttgtttggtgagtctagtgcacacaatttggtttcttctcc 1173390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 32290565 - 32290642
Alignment:
Q  143 tttgtttggtgggtcaagtgctcataatttg----tttgtttgatgagtcaggtgctcacactttagttgtttggtga 216  Q
    |||||||||||||||||||||||| ||||||    ||| |||| || |||| ||||||||| ||| ||||||||||||    
T  32290565 tttgtttggtgggtcaagtgctcacaatttggttatttttttggtgggtcaagtgctcacaatttggttgtttggtga 32290642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 32290597 - 32290645
Alignment:
Q  140 ttatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 188  Q
    |||||| |||||||||||||||||||| |||||| ||||||| ||||||    
T  32290597 ttatttttttggtgggtcaagtgctcacaatttggttgtttggtgagtc 32290645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 423
Target Start/End: Complemental strand, 38584242 - 38584202
Alignment:
Q  383 caatttggttgtttggtgagtcgagtgctcacaatttggtt 423  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  38584242 caatttgcttgtttggtgagtcgagtgctcacattttggtt 38584202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 38584137 - 38584082
Alignment:
Q  328 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttc 383  Q
    |||||||||| || || |||||| |||||| ||| |||||||||||||||||||||    
T  38584137 ttgtttggtgagttaaatgctcacaatttgattttttctcccccttttgattcttc 38584082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 32290556 - 32290598
Alignment:
Q  381 ttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 423  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||    
T  32290556 ttcaatttgtttgtttggtgggtcaagtgctcacaatttggtt 32290598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 38584145 - 38584097
Alignment:
Q  383 caatttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    |||||||||||||||||||||  | ||||||||||||| ||| ||||||    
T  38584145 caatttggttgtttggtgagttaaatgctcacaatttgattttttctcc 38584097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 423
Target Start/End: Complemental strand, 38584176 - 38584136
Alignment:
Q  383 caatttggttgtttggtgagtcgagtgctcacaatttggtt 423  Q
    ||||||||| |||||||||||  ||||||||||||||||||    
T  38584176 caatttggtagtttggtgagttaagtgctcacaatttggtt 38584136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 9511654 - 9511854
Alignment:
Q  17 tggttcatattggttcgtcaatttgtctttgcatggttcgtttggttcagtttggtttgatttggattcgct---ttcaatttgtttggttgttaggtga 113  Q
    ||||| || ||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||   || ||||||||||||||||||||||    
T  9511654 tggttaattttgtttcgtcaatttgtctttgcatggttcgtgtggttcagttcggtttgatttggattcgcttggttgaatttgtttggttgttaggtga 9511753  T
Q  114 gtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttgg 213  Q
    || |||||||| ||||||||| |   || ||||||||||| ||| |||||||| | || | ||||||| ||||||  ||||||||| ||| |||||||||    
T  9511754 gttaagatagtcctcacaattcg--tttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttgg 9511851  T
Q  214 tga 216  Q
    |||    
T  9511852 tga 9511854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 232 - 415
Target Start/End: Original strand, 24136891 - 24137075
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattcttttgattgatt 329  Q
    ||||||||||||||||| | | |||||||| ||||||||||||||||||   ||||||||||||| ||||||  ||||||| ||||||||    ||| ||    
T  24136891 tttggttgtttggtgagccgacttctcacaatttggttgtttggtgagtcgagtgctcacaattttgtttcttccccccttctgattcttcaatttggtt 24136990  T
Q  330 gtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 415  Q
    |||||||| ||  ||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||    
T  24136991 gtttggtgagtctagttctcacaatttggtttcttctccccc-tttgattcttcaatttggttgtttggtgagtctagttctcaca 24137075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 328 - 431
Target Start/End: Original strand, 24136927 - 24137029
Alignment:
Q  328 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtttctt 427  Q
    |||||||||| ||  |||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  24136927 ttgtttggtgagtcgagtgctcacaattttgtttcttc-cccccttctgattcttcaatttggttgtttggtgagtctagttctcacaatttggtttctt 24137025  T
Q  428 ctcc 431  Q
    ||||    
T  24137026 ctcc 24137029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 11335537 - 11335415
Alignment:
Q  89 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 188  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |  | ||||||||| |||||||||||||| |||||||||||||| || |      
T  11335537 ttcaatttgtttggttgtt-ggtgagtcaagatagtgctcacaattggtt--tgtttgtttggcgggtcaagtgctcacaatttgtttgtttggtggg-- 11335443  T
Q  189 aggtgctcacactttagttgtttggtga 216  Q
    | || |||||||||| ||||||||||||    
T  11335442 aagtactcacactttggttgtttggtga 11335415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 24137046 - 24137114
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggttt 301  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  24137046 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagttgagtgctcacaatttggttt 24137114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 320
Target Start/End: Original strand, 9511782 - 9511899
Alignment:
Q  206 ttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttc--- 302  Q
    ||||||||||| |   |||||||||||| |||||||||||||||| ||| |||||| |||||||||||||||||||   | ||||||||||| ||||       
T  9511782 ttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttggtgagttaaatactcacaatttgatttctta 9511881  T
Q  303 tcccccttttgattcttt 320  Q
    ||||||||||||||||||    
T  9511882 tcccccttttgattcttt 9511899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 222 - 329
Target Start/End: Complemental strand, 11335469 - 11335361
Alignment:
Q  222 gtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct---cccccttttgattct 318  Q
    ||||||||| |||| |||||||||| |   ||| |||||| ||||||||||||||||||    |||||||||||||||||||   |||||||||||||||    
T  11335469 gtgctcacaatttgtttgtttggtggga--agtactcacactttggttgtttggtgagtcgaatgctcacaatttggtttcttctcccccttttgattct 11335372  T
Q  319 tttgattgatt 329  Q
    |||||||||||    
T  11335371 tttgattgatt 11335361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 11335430 - 11335385
Alignment:
Q  386 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  11335430 tttggttgtttggtgagtcgaatgctcacaatttggtttcttctcc 11335385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 383 - 428
Target Start/End: Original strand, 24136919 - 24136964
Alignment:
Q  383 caatttggttgtttggtgagtcgagtgctcacaatttggtttcttc 428  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  24136919 caatttggttgtttggtgagtcgagtgctcacaattttgtttcttc 24136964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 423
Target Start/End: Original strand, 24136876 - 24136928
Alignment:
Q  371 cttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 423  Q
    |||||||||||||||||||||||||||||||| ||| | ||||||||||||||    
T  24136876 cttttgattcttcaatttggttgtttggtgagccgacttctcacaatttggtt 24136928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 249
Target Start/End: Original strand, 9511777 - 9511856
Alignment:
Q  170 tttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagt 249  Q
    |||||||||||| ||||||  ||||||||||||  |||||||||||| |   ||||||||| ||||||||||||||||||    
T  9511777 tttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttggtgagt 9511856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 24136725 - 24136772
Alignment:
Q  89 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattgg 136  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  24136725 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattgg 24136772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 9511777 - 9511845
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtt 300  Q
    |||| |||||||||||||| ||| |||||| || |||||||||||||||   |||||||||||||||||    
T  9511777 tttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggtt 9511845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 424
Target Start/End: Original strand, 24137075 - 24137114
Alignment:
Q  385 atttggttgtttggtgagtcgagtgctcacaatttggttt 424  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  24137075 atttggttgtttggtgagttgagtgctcacaatttggttt 24137114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 9511811 - 9511845
Alignment:
Q  389 ggttgtttggtgagtcgagtgctcacaatttggtt 423  Q
    |||||||||||||||||||||||||||||||||||    
T  9511811 ggttgtttggtgagtcgagtgctcacaatttggtt 9511845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 382
Target Start/End: Complemental strand, 11335425 - 11335371
Alignment:
Q  328 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattctt 382  Q
    |||||||||| ||  | |||||| |||||||||||||||||||||||||||||||    
T  11335425 ttgtttggtgagtcgaatgctcacaatttggtttcttctcccccttttgattctt 11335371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 24136808 - 24136855
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgag 279  Q
    |||| ||||| |||||||| |||||||||||| |||||||||||||||    
T  24136808 tttgcttgttgggtgagtcgagttctcacattatggttgtttggtgag 24136855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 42530736 - 42530835
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattcttttgattgatt 329  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||  | ||||||||||||||||||||   ||||||||||||||| |||||||||    
T  42530736 tttggttgtttggtgagtcgagttctcacactttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattcttctgattgatt 42530834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 89 - 249
Target Start/End: Original strand, 50295478 - 50295636
Alignment:
Q  89 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 188  Q
    ||||||||||||||||||| | |||||  ||||||||| ||||||| |||  | ||||||| |||||||||||||||| |||||| ||||||  ||||||    
T  50295478 ttcaatttgtttggttgttggatgagttgagatagtgcacacaatttgat--tgtttgtttagtgggtcaagtgctcacaatttggttgtttcgtgagtc 50295575  T
Q  189 aggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagt 249  Q
      ||||||||||||  |||||||||||| ||  || |||  |||||| |||||||||||||    
T  50295576 gagtgctcacacttgggttgtttggtgagttgagttctcgtactttgattgtttggtgagt 50295636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 328 - 415
Target Start/End: Complemental strand, 46692099 - 46692012
Alignment:
Q  328 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 415  Q
    |||||||||| ||  |||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||    
T  46692099 ttgtttggtgagtcgagtgctcacaatttggtttcttctctcccttttgattcttcaatttggtggtttggtgagtctagttctcaca 46692012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 319
Target Start/End: Complemental strand, 46692141 - 46692045
Alignment:
Q  225 ctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattctt 319  Q
    |||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||   ||||||||||||||||   ||||| ||||||||||||||    
T  46692141 ctcacaatttggttgtttggtgagtctaattctcaca-tttagttgtttggtgagtcgagtgctcacaatttggtttcttctctcccttttgattctt 46692045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 171 - 317
Target Start/End: Original strand, 50295527 - 50295677
Alignment:
Q  171 ttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttg 270  Q
    ||||||||||  || |||| ||||||||| ||| ||||||| |||| |   |||||||||||| |||||||||||||||  |||||||  | |||| |||    
T  50295527 ttgtttgtttagtgggtcaagtgctcacaatttggttgtttcgtgagtcgagtgctcacacttgggttgtttggtgagttgagttctcgtactttgattg 50295626  T
Q  271 tttggtgagtttggtgctcacaatttggtttct----cccccttttgattc 317  Q
    |||||||||||  || |||| ||||||||||||    ||||||||||||||    
T  50295627 tttggtgagttaagtactcataatttggtttcttctccccccttttgattc 50295677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 430
Target Start/End: Complemental strand, 46692105 - 46692060
Alignment:
Q  385 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctc 430  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  46692105 atttagttgtttggtgagtcgagtgctcacaatttggtttcttctc 46692060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 423
Target Start/End: Original strand, 42530722 - 42530773
Alignment:
Q  372 ttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 423  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| |||||||    
T  42530722 ttttgattctttaatttggttgtttggtgagtcgagttctcacactttggtt 42530773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 380
Target Start/End: Original strand, 50295620 - 50295677
Alignment:
Q  324 ttgattgtttggtgggtgaagtgctcataatttggtttcttct-cccccttttgattc 380  Q
    |||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||    
T  50295620 ttgattgtttggtgagttaagtactcataatttggtttcttctccccccttttgattc 50295677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 46692041 - 46691970
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgttt-ggtgagtttggtgctcacaatttggtttct 303  Q
    |||||| |||||||||||||||||||||||||| |||||||| |||||||   ||| ||||||||||||||||    
T  46692041 tttggtggtttggtgagtctagttctcacattt-ggttgttttggtgagtcgagtgttcacaatttggtttct 46691970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 2593599 - 2593560
Alignment:
Q  160 gtgctcataatttgtttgtttgatgagtcaggtgctcaca 199  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  2593599 gtgctcataatttgtttgtttgatgagtcaagtgctcaca 2593560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 42530767 - 42530811
Alignment:
Q  386 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  42530767 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc 42530811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 385 - 429
Target Start/End: Complemental strand, 46692012 - 46691967
Alignment:
Q  385 atttggttgttt-ggtgagtcgagtgctcacaatttggtttcttct 429  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||    
T  46692012 atttggttgttttggtgagtcgagtgttcacaatttggtttcttct 46691967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 50295554 - 50295586
Alignment:
Q  383 caatttggttgtttggtgagtcgagtgctcaca 415  Q
    |||||||||||||| ||||||||||||||||||    
T  50295554 caatttggttgtttcgtgagtcgagtgctcaca 50295586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 344 - 423
Target Start/End: Original strand, 20242015 - 20242093
Alignment:
Q  344 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 423  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||    
T  20242015 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtggtttggtgagtcgagttctcacactttggtt 20242093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 344 - 423
Target Start/End: Complemental strand, 20251052 - 20250974
Alignment:
Q  344 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 423  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||    
T  20251052 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtggtttggtgagtcgagttctcacactttggtt 20250974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 344 - 415
Target Start/End: Original strand, 20242107 - 20242177
Alignment:
Q  344 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 415  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  20242107 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggttgtttggtgagtagagttctcaca 20242177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 232 - 319
Target Start/End: Original strand, 20241964 - 20242052
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 319  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  20241964 tttgcttgtttggtgagtcgagttctcacattttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 20242052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 232 - 319
Target Start/End: Complemental strand, 20251103 - 20251015
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 319  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  20251103 tttgcttgtttggtgagtcgagttctcacattttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 20251015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 20241882 - 20242010
Alignment:
Q  89 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 186  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| | |   |  ||||||||||||||| ||  ||||||||||| ||||||| ||||    
T  20241882 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtc-agcactcataatttgcttgtttggtgag 20241980  T
Q  187 tcaggtgctcacactttagttgtttggtga 216  Q
    ||  || |||||| ||| ||||||||||||    
T  20241981 tcgagttctcacattttggttgtttggtga 20242010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 319
Target Start/End: Original strand, 20242056 - 20242144
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 319  Q
    |||||| |||||||||||| |||||||||| |||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  20242056 tttggtggtttggtgagtcgagttctcacactttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 20242144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 319
Target Start/End: Complemental strand, 20251011 - 20250923
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 319  Q
    |||||| |||||||||||| |||||||||| |||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  20251011 tttggtggtttggtgagtcgagttctcacactttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 20250923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 20251185 - 20251057
Alignment:
Q  89 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 186  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| | |   |  ||||||||||||||| ||  ||||||||||| ||||||| ||||    
T  20251185 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtc-agcactcataatttgcttgtttggtgag 20251087  T
Q  187 tcaggtgctcacactttagttgtttggtga 216  Q
    ||  || |||||| ||| ||||||||||||    
T  20251086 tcgagttctcacattttggttgtttggtga 20251057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 319
Target Start/End: Original strand, 20242148 - 20242237
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattctt 319  Q
    ||||||||||||||||||  |||||||||| ||||||||| ||||||||   ||||||||||||||||   ||||||||||||||||||||    
T  20242148 tttggttgtttggtgagtagagttctcaca-tttggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttttgattctt 20242237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 392
Target Start/End: Original strand, 20242199 - 20242247
Alignment:
Q  344 gtgctcataatttggtttcttctcccccttttgattcttcaatttggtt 392  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20242199 gtgctcacaatttggtttcttctcccccttttgattcttcaatttggtt 20242247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 20250960 - 20250913
Alignment:
Q  344 gtgctcataatttggtttcttctcccccttttgattcttcaatttggtt 392  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  20250960 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtt 20250913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 431
Target Start/End: Original strand, 20242177 - 20242223
Alignment:
Q  385 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    |||||||||| |||||||| | |||||||||||||||||||||||||    
T  20242177 atttggttgtctggtgagtagtgtgctcacaatttggtttcttctcc 20242223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 20241995 - 20242039
Alignment:
Q  386 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  20241995 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc 20242039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 20242087 - 20242131
Alignment:
Q  386 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  20242087 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc 20242131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 20250980 - 20250936
Alignment:
Q  386 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  20250980 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc 20250936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 20251072 - 20251028
Alignment:
Q  386 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  20251072 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc 20251028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 330
Target Start/End: Original strand, 20242331 - 20242361
Alignment:
Q  300 ttctcccccttttgattcttttgattgattg 330  Q
    |||||||||||||||||||||||||||||||    
T  20242331 ttctcccccttttgattcttttgattgattg 20242361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 330
Target Start/End: Complemental strand, 20250829 - 20250799
Alignment:
Q  300 ttctcccccttttgattcttttgattgattg 330  Q
    |||||||||||||||||||||||||||||||    
T  20250829 ttctcccccttttgattcttttgattgattg 20250799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 328 - 422
Target Start/End: Original strand, 21862276 - 21862371
Alignment:
Q  328 ttgtttggtgggtgaagtgctcataatttggtttcttctccccc-ttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggt 422  Q
    |||||||||| ||  |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||||| ||||||    
T  21862276 ttgtttggtgagtcgagtgctcacaatttggtttcttctcccccattttgattcttcaatttggttgtttggtgagtctaattctcacactttggt 21862371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 323 - 415
Target Start/End: Complemental strand, 28063679 - 28063589
Alignment:
Q  323 attgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 415  Q
    |||| |||||||||| || | ||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||| ||||||    
T  28063679 attggttgtttggtgagtcaggtgctcacaatttggtttcttctccc--ttttgattcttcaatttggttgtttggtgagtctagttctcaca 28063589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 343 - 404
Target Start/End: Original strand, 13167536 - 13167597
Alignment:
Q  343 agtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtc 404  Q
    |||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13167536 agtgctcacagtttggtttcttctcccccttctgattcttcaatttggttgtttggtgagtc 13167597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 21862241 - 21862311
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 303  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||   ||||||||||||||||||||    
T  21862241 tttggttgtttggtgagtctagctctcaca-tttggttgtttggtgagtcgagtgctcacaatttggtttct 21862311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 431
Target Start/End: Original strand, 21862270 - 21862316
Alignment:
Q  385 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21862270 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 21862316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 317
Target Start/End: Original strand, 21862043 - 21862137
Alignment:
Q  224 gctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattc 317  Q
    ||||||| |||| |||||||||||||| | ||||||||||||||||||||| ||||  | ||||||||||||||||||||   |||||||||||||    
T  21862043 gctcacaatttgcttgtttggtgagtcgaattctcacattttggttgtttgttgagcgt-gtgctcacaatttggtttcttctccccttttgattc 21862137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 415
Target Start/End: Original strand, 21862102 - 21862173
Alignment:
Q  344 gtgctcataatttggtttcttctcccccttttgattc-ttcaatttggttgtttggtgagtcgagtgctcaca 415  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| ||||||    
T  21862102 gtgctcacaatttggtttcttctcccc-ttttgattcgttcaatttggttgtttggtgagtctagttctcaca 21862173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 21862144 - 21862213
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttc 302  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||   |||||||  ||||||||||    
T  21862144 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagtcgagtgctcaatatttggtttc 21862213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 320
Target Start/End: Complemental strand, 28063618 - 28063528
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct---cccccttttgattcttt 320  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||   | ||| ||||||| |||||   |||||||||||||||||    
T  28063618 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtaagttgaattctcccaatttgatttcttcacccccttttgattcttt 28063528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 319
Target Start/End: Complemental strand, 28063678 - 28063622
Alignment:
Q  264 ttggttgtttggtgagtttggtgctcacaatttggtttc-tcccccttttgattctt 319  Q
    |||||||||||||||||  |||||||||||||||||||| || ||||||||||||||    
T  28063678 ttggttgtttggtgagtcaggtgctcacaatttggtttcttctcccttttgattctt 28063622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 431
Target Start/End: Complemental strand, 28063678 - 28063634
Alignment:
Q  387 ttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    ||||||||||||||||||  |||||||||||||||||||||||||    
T  28063678 ttggttgtttggtgagtcaggtgctcacaatttggtttcttctcc 28063634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 404
Target Start/End: Original strand, 21862179 - 21862259
Alignment:
Q  328 ttgtttggtgggtgaagtgctcataatttggtttcttctccccc----ttttgattcttcaatttggttgtttggtgagtc 404  Q
    |||||||||| ||  ||||||||  |||||||||| ||||||||    || ||||||||||||||||||||||||||||||    
T  21862179 ttgtttggtgagtcgagtgctcaatatttggtttcctctcccccccccttctgattcttcaatttggttgtttggtgagtc 21862259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 13167445 - 13167502
Alignment:
Q  345 tgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagt 403  Q
    |||||| |||||||| |||||||||| ||||| ||||||||||||||||| ||||||||    
T  13167445 tgctcacaatttggtgtcttctcccc-ttttggttcttcaatttggttgtgtggtgagt 13167502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 431
Target Start/End: Original strand, 21862173 - 21862219
Alignment:
Q  385 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    |||||||||||||||||||||||||||||  |||||||||| |||||    
T  21862173 atttggttgtttggtgagtcgagtgctcaatatttggtttcctctcc 21862219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 426
Target Start/End: Original strand, 10741529 - 10741569
Alignment:
Q  386 tttggttgtttggtgagtcgagtgctcacaatttggtttct 426  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  10741529 tttggttgttcggtgagtcgagtactcacaatttggtttct 10741569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 13167527 - 13167561
Alignment:
Q  397 ggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    ||||||||||||||||||| |||||||||||||||    
T  13167527 ggtgagtcgagtgctcacagtttggtttcttctcc 13167561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 13167367 - 13167412
Alignment:
Q  143 tttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 188  Q
    |||||||||||||||||||||||  |||||| ||||||| ||||||    
T  13167367 tttgtttggtgggtcaagtgctcgcaatttgcttgtttggtgagtc 13167412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 21862082 - 21862126
Alignment:
Q  386 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    |||||||||||| |||| || |||||||||||||||||||||||||    
T  21862082 tttggttgtttgttgag-cgtgtgctcacaatttggtttcttctcc 21862126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 28063813 - 28063772
Alignment:
Q  95 ttgtttggttgttaggtgagtcaagatagtgctcacaattgg 136  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||    
T  28063813 ttgtttggttgttaggtgagttaagattgtgctcacatttgg 28063772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 13097907 - 13097975
Alignment:
Q  144 ttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttg 212  Q
    ||||||| || ||| |||||||| || ||||||||||| |||| || ||||||||| ||| ||||||||    
T  13097907 ttgtttgatgagtcgagtgctcacaaattgtttgtttgttgagacaagtgctcacaatttggttgtttg 13097975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 13167579 - 13167611
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattt 264  Q
    |||||||||||||||||||||||||| ||||||    
T  13167579 tttggttgtttggtgagtctagttcttacattt 13167611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 21862335 - 21862371
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggt 268  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  21862335 tttggttgtttggtgagtctaattctcacactttggt 21862371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 89 - 238
Target Start/End: Complemental strand, 2072519 - 2072369
Alignment:
Q  89 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 186  Q
    |||||||||||| |||||| ||||||||||||||| |||||| ||||| |  ||| |||| | ||||||| |  |||||| |||||| ||||||||||||    
T  2072519 ttcaatttgtttagttgttgggtgagtcaagatagggctcaccattggtttgattgtttggtgggtgggtgat-tgctcacaatttgattgtttgatgag 2072421  T
Q  187 tcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggtt 238  Q
    ||  ||||||| ||||| |||||||||||| ||| || |||||| |||||||    
T  2072420 tcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtt 2072369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 89 - 238
Target Start/End: Complemental strand, 2076049 - 2075899
Alignment:
Q  89 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 186  Q
    |||||||||||| |||||| ||||||||||||||| |||||| ||||| |  ||| |||| | ||||||| |  |||||| |||||| |||||||| |||    
T  2076049 ttcaatttgtttagttgttgggtgagtcaagatagggctcaccattggtttaattgtttggtgggtgggtgat-tgctcacaatttggttgtttgacgag 2075951  T
Q  187 tcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggtt 238  Q
    ||  ||||||| ||||| |||||||||||| ||| || |||||| |||||||    
T  2075950 tcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtt 2075899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 328 - 404
Target Start/End: Complemental strand, 15630076 - 15630001
Alignment:
Q  328 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtc 404  Q
    |||||||||| ||  |||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  15630076 ttgtttggtgagtcgagtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggttgtttagtgagtc 15630001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 431
Target Start/End: Complemental strand, 15629990 - 15629944
Alignment:
Q  385 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15629990 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 15629944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 232 - 326
Target Start/End: Complemental strand, 15630019 - 15629924
Alignment:
Q  232 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattcttttgattg 326  Q
    ||||||||||| ||||||||| ||||||||||| |||||||||||||||   ||||||||||||||||||||   |||||| |||||||| ||||||    
T  15630019 tttggttgtttagtgagtctaattctcacattt-ggttgtttggtgagtcgagtgctcacaatttggtttcttctccccttatgattcttctgattg 15629924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 237 - 319
Target Start/End: Complemental strand, 15630107 - 15630023
Alignment:
Q  237 ttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 319  Q
    |||||||||||||| ||| |||||| ||||||||||||||||||   ||||||||||||||||||||   |||||||||||||||    
T  15630107 ttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtttcttctccccttttgattctt 15630023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 15630081 - 15630036
Alignment:
Q  386 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  15630081 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 15630036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 19825164 - 19825091
Alignment:
Q  222 gtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatt 295  Q
    ||||||||| ||||||||||||| ||||| ||| |||||| |||||||||||||||||||  ||||||||||||    
T  19825164 gtgctcacaatttggttgtttggcgagtcgagtgctcacaatttggttgtttggtgagttaagtgctcacaatt 19825091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 2072446 - 2072364
Alignment:
Q  223 tgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttctcc 305  Q
    |||||||| |||| ||||||| |||||| ||| |||| | |||||||||||||||||||  || |||||||||||||||||||    
T  2072446 tgctcacaatttgattgtttgatgagtcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtttctcc 2072364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 2075976 - 2075894
Alignment:
Q  223 tgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttctcc 305  Q
    |||||||| ||||||||||||  ||||| ||| |||| | |||||||||||||||||||  || |||||||||||||||||||    
T  2075976 tgctcacaatttggttgtttgacgagtcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtttctcc 2075894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 230
Target Start/End: Complemental strand, 19825223 - 19825094
Alignment:
Q  102 gttgttaggtgagtcaagatagtgctcacaattggata--ttatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcaca 199  Q
    |||||| |||||||||||||| ||||||||||| | |   || |||| |||||| || ||||||||| |||||| |||||||  |||||  |||||||||    
T  19825223 gttgtttggtgagtcaagataatgctcacaatttgtttgtttgtttggttggtgagt-aagtgctcacaatttggttgtttggcgagtcgagtgctcaca 19825125  T
Q  200 ctttagttgtttggtgaattaggtgctcaca 230  Q
     ||| |||||||||||| ||| |||||||||    
T  19825124 atttggttgtttggtgagttaagtgctcaca 19825094  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 423
Target Start/End: Complemental strand, 19825157 - 19825117
Alignment:
Q  383 caatttggttgtttggtgagtcgagtgctcacaatttggtt 423  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  19825157 caatttggttgtttggcgagtcgagtgctcacaatttggtt 19825117  T

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Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 15630107 - 15630044
Alignment:
Q  206 ttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggtt 269  Q
    ||||||||||| |   ||||||||||||||||||||||||||||| ||| |||||| |||||||    
T  15630107 ttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtt 15630044  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 15630108 - 15630044
Alignment:
Q  174 tttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggtt 238  Q
    |||||||| ||||||  ||||||||||||| |||||||||||| |   ||||||||| |||||||    
T  15630108 tttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtt 15630044  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 423
Target Start/End: Complemental strand, 15630107 - 15630075
Alignment:
Q  391 ttgtttggtgagtcgagtgctcacaatttggtt 423  Q
    ||||||||||||||||||||||||| |||||||    
T  15630107 ttgtttggtgagtcgagtgctcacactttggtt 15630075  T

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Target: scaffold0499 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 7329 - 7233
Alignment:
Q  144 ttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttg 243  Q
    |||||||||| ||| |||||||| || ||| ||||||| |||| ||  |||||||| |||||||   |||||| | ||||||||||| ||||||||||||    
T  7329 ttgtttggtgagtcgagtgctcacaaattgattgtttgttgagacaaatgctcacaatttagtt---tggtgagtcaggtgctcacaatttggttgtttg 7233  T

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Target: scaffold0499; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 416
Target Start/End: Complemental strand, 7333 - 7304
Alignment:
Q  387 ttggttgtttggtgagtcgagtgctcacaa 416  Q
    ||||||||||||||||||||||||||||||    
T  7333 ttggttgtttggtgagtcgagtgctcacaa 7304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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