View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2082_low_10 (Length: 278)

Name: NF2082_low_10
Description: NF2082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2082_low_10
NF2082_low_10
[»] chr3 (15 HSPs)
chr3 (13-262)||(52063264-52063510)
chr3 (100-157)||(10244836-10244894)
chr3 (100-162)||(9586514-9586577)
chr3 (100-162)||(10761152-10761215)
chr3 (100-162)||(10769471-10769534)
chr3 (100-162)||(23138918-23138981)
chr3 (100-162)||(30051602-30051665)
chr3 (100-162)||(38449565-38449628)
chr3 (100-162)||(38456052-38456115)
chr3 (100-157)||(10238714-10238772)
chr3 (100-157)||(11840227-11840285)
chr3 (100-157)||(42191722-42191780)
chr3 (100-157)||(42197664-42197722)
chr3 (100-144)||(26429919-26429964)
chr3 (102-162)||(28964475-28964536)
[»] chr2 (6 HSPs)
chr2 (100-162)||(13150191-13150254)
chr2 (100-162)||(30964922-30964985)
chr2 (100-157)||(13455699-13455757)
chr2 (100-157)||(13461640-13461698)
chr2 (100-157)||(35085181-35085239)
chr2 (100-157)||(36750014-36750072)
[»] chr4 (10 HSPs)
chr4 (102-157)||(24287587-24287643)
chr4 (100-162)||(6257706-6257769)
chr4 (100-162)||(10733851-10733914)
chr4 (100-162)||(10739838-10739901)
chr4 (100-162)||(10947620-10947683)
chr4 (100-162)||(10953607-10953670)
chr4 (100-162)||(26957305-26957368)
chr4 (100-162)||(48160554-48160617)
chr4 (100-162)||(48166773-48166836)
chr4 (70-162)||(26972026-26972119)
[»] chr1 (9 HSPs)
chr1 (44-157)||(1077844-1077955)
chr1 (100-162)||(31051139-31051202)
chr1 (100-162)||(31057639-31057702)
chr1 (100-162)||(44409595-44409658)
chr1 (100-157)||(12184098-12184156)
chr1 (100-157)||(25275548-25275606)
chr1 (100-157)||(25382037-25382095)
chr1 (100-157)||(50305797-50305855)
chr1 (70-157)||(24927240-24927328)
[»] chr8 (4 HSPs)
chr8 (100-162)||(39727786-39727849)
chr8 (100-157)||(32890488-32890546)
chr8 (100-157)||(32896612-32896670)
chr8 (100-157)||(36818572-36818630)
[»] chr7 (7 HSPs)
chr7 (100-162)||(351382-351445)
chr7 (100-162)||(3817812-3817875)
chr7 (100-162)||(35153030-35153093)
chr7 (100-157)||(338981-339039)
chr7 (100-157)||(5979678-5979736)
chr7 (100-157)||(28421460-28421518)
chr7 (100-144)||(3811670-3811715)
[»] chr6 (5 HSPs)
chr6 (100-162)||(8651305-8651368)
chr6 (100-162)||(30906082-30906145)
chr6 (100-157)||(4580823-4580881)
chr6 (100-157)||(25343227-25343285)
chr6 (100-157)||(25353813-25353871)
[»] chr5 (5 HSPs)
chr5 (100-162)||(41296874-41296937)
chr5 (100-157)||(12686680-12686738)
chr5 (100-157)||(12692782-12692840)
chr5 (100-157)||(32097523-32097581)
chr5 (70-157)||(19060245-19060333)
[»] scaffold0208 (2 HSPs)
scaffold0208 (100-157)||(11995-12053)
scaffold0208 (70-157)||(6122-6210)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 262
Target Start/End: Original strand, 52063264 - 52063510
Alignment:
Q  13 aatattattggaataggatttctgattacttatctagttagtcttattacttatatttttgatcattaatcaataaagaattctaactgataaatagcta 112  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||||||||||||    
T  52063264 aatattattggaataagatttctgattacttatctagttagtcttattacttat---tttgatcattaatcaataaagaatactaactgataaatagcta 52063360  T
Q  113 atttaattatttgacgatatttgcccacataacgacattgaaataaaatattcctacatttgctttcaatgaataatagaagaacacacctctctttaac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  52063361 atttaattatttgacgatatttgcccacataacgacattgaaataaaatattcctacattttctttcaatgaataatagaagaacacacctctctttaac 52063460  T
Q  213 caatagcctgccacagacattaccacgttcgtcccattttgggaaatcat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52063461 caatagcctgccacagacattaccacgttcgtcccattttgggaaatcat 52063510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 10244836 - 10244894
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||||||||    
T  10244836 tgataaatagctaatataattattattacgatatttgcccacataatgatattgaaata 10244894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 9586514 - 9586577
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  9586514 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaatataata 9586577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 10761152 - 10761215
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  10761152 tgataaatagctaatataattattgttacgatatttgcccacataatgatattggaatataata 10761215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 10769471 - 10769534
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  10769471 tgataaatagctaatataattattgttacgatatttgcccacataatgatattggaatataata 10769534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 23138918 - 23138981
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  23138918 tgataaatagctaatataattattgttacgatatttgcccacataatgatattggaatataata 23138981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 30051602 - 30051665
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  30051602 tgataaatagctaatataattattgttacgatatttgcccacataatgatattggaatataata 30051665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 38449565 - 38449628
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  38449565 tgataaatagctaatataattattgttacgatatttgcccacataatgatattggaatataata 38449628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 38456052 - 38456115
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  38456052 tgataaatagctaatataattattgttacgatatttgcccacataatgatattggaatataata 38456115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 10238714 - 10238772
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  10238714 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 10238772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 11840227 - 11840285
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  11840227 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 11840285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 42191722 - 42191780
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  42191722 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 42191780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 42197664 - 42197722
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  42197664 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 42197722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 26429919 - 26429964
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataa 144  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||    
T  26429919 tgataaatagctaatataattattattacgatatttgcccacataa 26429964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 28964536 - 28964475
Alignment:
Q  102 ataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  28964536 ataaatagctaatataattattgttacgatatttgcccacataatgatattggaatataata 28964475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 13150191 - 13150254
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || ||||||||| ||||    
T  13150191 tgataaatagctaatataattattgttacgatatttgcccacataatgatattgaaatataata 13150254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 30964985 - 30964922
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  30964985 tgataaatagctaatataattattgttacgatatttgcccacataatgatattggaatataata 30964922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 13455757 - 13455699
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  13455757 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 13455699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 13461698 - 13461640
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  13461698 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 13461640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 35085181 - 35085239
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  35085181 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 35085239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 36750072 - 36750014
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  36750072 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 36750014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 24287643 - 24287587
Alignment:
Q  102 ataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||| |||||||| | ||||||||||||||||||| || |||||||||    
T  24287643 ataaatagctaatataattattattacgatatttgcccacataatgatattgaaata 24287587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 6257706 - 6257769
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  6257706 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaatataata 6257769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 10733851 - 10733914
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  10733851 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaatataata 10733914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 10739838 - 10739901
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  10739838 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaatataata 10739901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 10947620 - 10947683
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  10947620 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaatataata 10947683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 10953607 - 10953670
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  10953607 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaatataata 10953670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 26957305 - 26957368
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  26957305 tgataaatagctaatataattattgttacgatatttgcccacataatgatattggaatataata 26957368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 48160617 - 48160554
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  48160617 tgataaatagctaatataattattgttacgatatttgcccacataatgatattggaatataata 48160554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 48166836 - 48166773
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  48166836 tgataaatagctaatataattattgttacgatatttgcccacataatgatattggaatataata 48166773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 26972026 - 26972119
Alignment:
Q  70 tttgatcattaatcaataaagaattctaactgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    |||||||| |||||||| |||| |   || ||||||||||||||| |||||||| | || |||||||||||||||| || |||| |||| ||||    
T  26972026 tttgatcactaatcaattaagactcacaattgataaatagctaatataattattgttacaatatttgcccacataatgatattggaatataata 26972119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 1077955 - 1077844
Alignment:
Q  44 atctagttagtcttattacttatatttttgatcattaatcaataaagaattctaactgataaatagctaatttaattatt-tgacgatatttgcccacat 142  Q
    ||||| ||||||||||||||||    |||||||| |||||||| |||  |   || ||||||||||||||| |||||||| | |||||||||||||||||    
T  1077955 atctaattagtcttattacttaa---tttgatcactaatcaattaaggctcacaattgataaatagctaatataattattattacgatatttgcccacat 1077859  T
Q  143 aacgacattgaaata 157  Q
    || || |||| ||||    
T  1077858 aatgatattggaata 1077844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 31051202 - 31051139
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  31051202 tgataaatagctaatataattattgttacgatatttgcccacataatgatattggaatataata 31051139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 31057702 - 31057639
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  31057702 tgataaatagctaatataattattgttacgatatttgcccacataatgatattggaatataata 31057639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 44409658 - 44409595
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  44409658 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaatataata 44409595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 12184098 - 12184156
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||| ||||| |||||||| | ||||||||||||||||||| || |||||||||    
T  12184098 tgataaataactaatataattattattacgatatttgcccacataatgatattgaaata 12184156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 25275548 - 25275606
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  25275548 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 25275606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 25382037 - 25382095
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  25382037 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 25382095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 50305855 - 50305797
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  50305855 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 50305797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 24927240 - 24927328
Alignment:
Q  70 tttgatcattaatcaataaagaattctaactgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    |||||||| |||||||| |||| | | || ||||||||||||||| |||||||| |   ||||||||||||||||| | ||||| ||||    
T  24927240 tttgatcactaatcaattaagactccaaattgataaatagctaatataattattatagagatatttgcccacataatgtcattggaata 24927328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 39727786 - 39727849
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  39727786 tgataaatagctaatataattattgttacgatatttgcccacataatgatattggaatataata 39727849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 32890546 - 32890488
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  32890546 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 32890488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 32896670 - 32896612
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  32896670 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 32896612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 36818630 - 36818572
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  36818630 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 36818572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 351445 - 351382
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  351445 tgataaatagctaatataattattgttacgatatttgcccacataatgatattggaatataata 351382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 3817812 - 3817875
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | |||||||||||| |||||| || ||||||||| ||||    
T  3817812 tgataaatagctaatataattattgttacgatatttgcctacataatgatattgaaatataata 3817875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 35153030 - 35153093
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||| ||||| |||||||| | ||||||||||||||||||| ||||||| |||| ||||    
T  35153030 tgataaatatctaatataattattgttacgatatttgcccacataatgacattggaatataata 35153093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 339039 - 338981
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | | ||||||||||||||||| || |||||||||    
T  339039 tgataaatagctaatataattattgttatgatatttgcccacataatgatattgaaata 338981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 5979678 - 5979736
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||| ||||| |||||||| | ||||||||||||||||||| || |||||||||    
T  5979678 tgataaataactaatataattattattacgatatttgcccacataatgatattgaaata 5979736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 28421460 - 28421518
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  28421460 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 28421518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 3811670 - 3811715
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataa 144  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||    
T  3811670 tgataaatagctaatataattattgttacgatatttgcccacataa 3811715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 8651305 - 8651368
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  8651305 tgataaatagctaatataattattgttacgatatttgcccacataatgatattggaatataata 8651368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 30906082 - 30906145
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||| ||||| |||||||| | ||||||||||||||||||| || ||||||||| ||||    
T  30906082 tgataaataactaatataattattattacgatatttgcccacataatgatattgaaatataata 30906145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 4580823 - 4580881
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  4580823 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 4580881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 25343285 - 25343227
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  25343285 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 25343227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 25353871 - 25353813
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  25353871 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 25353813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 41296937 - 41296874
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaataaaata 162  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| |||| ||||    
T  41296937 tgataaatagctaatataattattattacgatatttgcccacataatgatattgtaatataata 41296874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 12686680 - 12686738
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  12686680 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 12686738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 12692782 - 12692840
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  12692782 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 12692840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 32097523 - 32097581
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  32097523 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 32097581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 19060245 - 19060333
Alignment:
Q  70 tttgatcattaatcaataaagaattctaactgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    |||||||| |||||||| |||  | | || ||| ||||||||||| |||||||| ||  ||||||||||||||||| | ||||||||||    
T  19060245 tttgatcactaatcaattaagtctccaaattgacaaatagctaatataattattatggagatatttgcccacataatgtcattgaaata 19060333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 12053 - 11995
Alignment:
Q  100 tgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  12053 tgataaatagctaatataattattattacgatatttgcccacataatgatattggaata 11995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 6210 - 6122
Alignment:
Q  70 tttgatcattaatcaataaagaattctaactgataaatagctaatttaattatt-tgacgatatttgcccacataacgacattgaaata 157  Q
    |||||||| |||||||| |||  ||  || ||||||||| ||||| |||||||| | ||||||||||||||||||| || |||| ||||    
T  6210 tttgatcactaatcaattaaggctttaaattgataaataactaatataattattattacgatatttgcccacataatgatattggaata 6122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University