View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2082_low_11 (Length: 273)
Name: NF2082_low_11
Description: NF2082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2082_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 142 - 256
Target Start/End: Complemental strand, 54147373 - 54147259
Alignment:
| Q |
142 |
tcatagaccaacacaattttgcagacattgagaagactagttaccaatgccatgttatcacaacaatgaagcctactaactcccaagcaccaaaaaacca |
241 |
Q |
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| T |
54147373 |
tcatagaccaacacaattttgtagacattgagaagactagttaccaatgccatgttatcacaacaatgaagcctactaactcccaagcactaaaaaacca |
54147274 |
T |
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| Q |
242 |
atttatgcttaggta |
256 |
Q |
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| T |
54147273 |
atttatgcttaggta |
54147259 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 24487454 - 24487524
Alignment:
| Q |
154 |
acaattttgcagacattgagaagactagttaccaatgccatgttatcacaacaatgaagcctactaactcc |
224 |
Q |
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|||||||| |||||| ||||||||||| ||| ||| |||||| |||||||| |||||||||||||||| |
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| T |
24487454 |
acaattttacagacaacgagaagactagatacaaatatcatgttgccacaacaaagaagcctactaactcc |
24487524 |
T |
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