View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2082_low_12 (Length: 249)
Name: NF2082_low_12
Description: NF2082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2082_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 52294492 - 52294706
Alignment:
| Q |
18 |
tcaaatgtatgtttaattaattgatttcataaagacatttttgtagttttnnnnnnntagcaaagttacaacagtttcttcctgcagacccgataaacat |
117 |
Q |
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| T |
52294492 |
tcaaatgtatgtttaattaatt-------taaagacatttttgtagttttcaaaaaatagcaaagttacaacagtttcttcctgcagacccgataaacat |
52294584 |
T |
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| Q |
118 |
ttcaaaacaagcactaaatccagatgaacaaggcaaatccttggcttttgcactataagttcttatctatccgcgttctttatctgatgttgattgccca |
217 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52294585 |
ttcgaaacaagcactaaatccagatgaacaaggcaaatccttggcttttgcactacaagttcttatctatccgcgttctttatctgatgttgattgccca |
52294684 |
T |
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| Q |
218 |
accctaccattcccttcctatg |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
52294685 |
accctaccattcccttcctatg |
52294706 |
T |
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