View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2082_low_3 (Length: 411)
Name: NF2082_low_3
Description: NF2082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2082_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 25277528 - 25277153
Alignment:
| Q |
1 |
aggcttaaagtttaaacaactttcaaatgaaaacactttcacttcaaacattgttaaaactatttcaacacttgaacatatttccatggctacaacacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
25277528 |
aggcttaaagtttaaacaactttcaaatggaaacactttcacttcaaacattgttaaaactattttaacacctgaacatatttccatggctacaacacaa |
25277429 |
T |
|
| Q |
101 |
ccaaccaaagtcaatagcgttgataagatgcttacacctacctttccctttgtcaagtagtcattgtatattcgagataataaaagtcggcataaaagaa |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
25277428 |
ccaaccaaactcaatagcgttgataagatgcttacacctacctttccctttgtcaagtagccattgtatattcgagataataaaagtcggaaaaaaagaa |
25277329 |
T |
|
| Q |
201 |
atggtaacacttcttctagcagggttaacattaccgatggtgtgaacaatgacaataatatgttcctaaatggaaactatcaagagtgtgcaactgctct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||| |
|
|
| T |
25277328 |
atggtaacacttcttctagcagggttaacatttcatatggtgtgaacaatgacaataatatgttcctaaatggaaactatcaatattgtgcagctgctcc |
25277229 |
T |
|
| Q |
301 |
gatgcaaatatcggtttatgaaaatggtgaaaaaggagaaaatcctacagaggctgacagctctgatgcaaatgga |
376 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| ||||| |||| ||| |||| | |||||||||||||||| |
|
|
| T |
25277228 |
tatgcaaatatctgtttatgaaaatgttgaaaaaggaaaaaattctactgagtctgatatctctgatgcaaatgga |
25277153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 25262094 - 25262230
Alignment:
| Q |
79 |
tatttccatggctacaacacaaccaaccaaagtcaatagcgttgataagatgcttacacctacctttccctttgtcaagtagtcattgtatattcgagat |
178 |
Q |
| |
|
|||| |||| |||||||||||| |||||||| ||||||| ||||||||| || |||| ||||||||||||||| |||| | ||||| | ||||| |||| |
|
|
| T |
25262094 |
tattcccatagctacaacacaatcaaccaaactcaatagtgttgataagttgtttactcctacctttccctttatcaataaatcattatttattcaagat |
25262193 |
T |
|
| Q |
179 |
aataaaagtcggcataaaagaaatggtaacacttctt |
215 |
Q |
| |
|
||||| |||| ||| |||||||||||||||| ||||| |
|
|
| T |
25262194 |
aataagagtcagcaaaaaagaaatggtaacaattctt |
25262230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 25300379 - 25300263
Alignment:
| Q |
1 |
aggcttaaagtttaaacaactttcaaatgaaaacactttcacttcaaacattgttaaaactatttcaacacttgaacatatttccatggctacaacacaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| ||||| |||||||||||||||||| |||| |||| | ||| |||||||| ||||| ||| ||| |
|
|
| T |
25300379 |
aggcttaaagtttcaacaactttcaaatggaaatactttaacttcaaacattgttaaagatattccaacctctcaacttatttccaaggctataac-caa |
25300281 |
T |
|
| Q |
101 |
ccaaccaaagtcaatagc |
118 |
Q |
| |
|
|||||| || |||||||| |
|
|
| T |
25300280 |
ccaacccaactcaatagc |
25300263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University