View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2082_low_7 (Length: 327)
Name: NF2082_low_7
Description: NF2082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2082_low_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 327
Target Start/End: Original strand, 49074239 - 49074553
Alignment:
| Q |
13 |
catcaagaaaatatgtgttgcaaatatcaaattctagtattctacttgcctatataagcaacttttcaacactcaacaatatagaacaagtaagaacatc |
112 |
Q |
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| T |
49074239 |
catcaagaaaatatgtgttgcaaatttcaaattctagtattctacttgcctatataagcaacttttcaacactcaacaatgtagaacaagaaagatcatc |
49074338 |
T |
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| Q |
113 |
ttaaatatttataggttaaagagcaaagcaagaaacacttcaaaatattgagcatcgttcaaatctgttacattagaaaagtattcaaaagagttgttca |
212 |
Q |
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| T |
49074339 |
ttaaatatttataggttaaagagcaaagcaagaaacacttcaaaatattgagcatcgttcaaatctgttacattagaaaagtattcaaaagagttgttca |
49074438 |
T |
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| Q |
213 |
ttgtcacatactttctttcaaaaaattacatacttgtattgaatgataaattgtattatcatttttatgagtaaaatatgtacacaaacaactaagtatt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49074439 |
ttgtcacatactttctttcaaaaaattacatacttgtattgaatgataaattgtattatcatttttatgagtaaaatatgtacacaaacaactaagtatt |
49074538 |
T |
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| Q |
313 |
tgatttatcaatgtt |
327 |
Q |
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||||||||||||||| |
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| T |
49074539 |
tgatttatcaatgtt |
49074553 |
T |
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