View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2082_low_8 (Length: 296)

Name: NF2082_low_8
Description: NF2082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2082_low_8
NF2082_low_8
[»] chr3 (1 HSPs)
chr3 (11-296)||(45675224-45675509)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 296
Target Start/End: Original strand, 45675224 - 45675509
Alignment:
Q  11 cacagattgagagaagtatcctttaacagaacaaaaggaggtaggaagaagnnnnnnnntagacataaaaaattaaagaacagtaacaaaacatgcaagt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  45675224 cacagattgagagaagtatcctttaacagaacaaaaggaggtaggaagaagaaaaaaaatagacataaaaaattaaagaacagtaacaaaacatgcaagt 45675323  T
Q  111 tcagacgttggacaaacaagttcagaggaatccatgggaccagacacaggggccatttcgtaatcatctactatgtagtgaactcactcggtgcttatct 210  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45675324 tcagaagttggacaaacaagttcagaggaatccatgtgaccagacacaggggccatttcgtaatcatctactatgaagtgaactcactcggtgcttatct 45675423  T
Q  211 ctatatttccccttcccaaagattttgtactgtgttttctcttattctcaattgacgaacggagtatgtaaaaactttaatatttc 296  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||   |||||||||||||    
T  45675424 ctatatttccctttcccaaagattttgtactgtgttttctcttattctcaattgaagaaaggagtatgtacgtactttaatatttc 45675509  T

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