View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2082_low_9 (Length: 295)
Name: NF2082_low_9
Description: NF2082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2082_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 277
Target Start/End: Original strand, 9989092 - 9989357
Alignment:
| Q |
12 |
agaatatggagaaataaatggaatgatcgacaactttcaaattcctatttgaactgcccggaggaacaaaatcgccgcaccatgttcgcatatgctccca |
111 |
Q |
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| T |
9989092 |
agaatatggagaaataaatggaataatcgacaactttcaaattcctatttgaactgcctggaggaacaaaaacgccgcaccatgttcgcatatgctccca |
9989191 |
T |
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| Q |
112 |
aacttgacgttgttgtttagtttgttgaaaaggaaaatgagagaatttatcaaccgtaataattgtccttccagatatagccgttttcgttatctgtatg |
211 |
Q |
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| T |
9989192 |
aacttgacgttgttgtttagtttgttgaaaaggaaaatgagagaatttatcaaccgtaataattgtccttccagatatagccgttttcgttatctgtacg |
9989291 |
T |
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| Q |
212 |
gaaaaataaaattacaatatgatttcatgtagtatgtatttttagtcccagttagtcatagggatc |
277 |
Q |
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| T |
9989292 |
gaaaaataaaattacaatatgatttcatgtagtatgtatttttagtcccagttagtcatagggatc |
9989357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 84 - 170
Target Start/End: Original strand, 9994254 - 9994341
Alignment:
| Q |
84 |
cgccgcaccatgttcgcatatgctcccaaacttgacgttgtt-gtttagtttgttgaaaaggaaaatgagagaatttatcaaccgtaa |
170 |
Q |
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| T |
9994254 |
cgccgcaccttgttcacatatgctcccaaacttgacgttgtttgtttagtttgttgaaaaggaacatgagagaatttatcaactgtaa |
9994341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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