View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20831_high_3 (Length: 417)
Name: NF20831_high_3
Description: NF20831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20831_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 7 - 390
Target Start/End: Original strand, 2825147 - 2825528
Alignment:
| Q |
7 |
tagataatacttttttatcattatacatccaaaacatggaaataaaaaagagagaggagaagcaaaggttttataatcgatatgtatatatacacaaatt |
106 |
Q |
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| T |
2825147 |
tagataatacttttttatcattatacatccaaaatatggaaataaaaaagagataggaaa--caaaggttttataatcgatatgtatatatacacaaatt |
2825244 |
T |
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| Q |
107 |
acgttttcttctttgtttcttattcaacttgacctctaaataggaactgttcttttatacttcatattagatgcttgagtttaaataaatgaaagggcca |
206 |
Q |
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| T |
2825245 |
acgttttcttctttgtttcttattcaacttgacctctaaataggaactgttcttttatacttcatattagatgcttcagtttaaataaatgaaagggcca |
2825344 |
T |
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| Q |
207 |
aacagaacatgcaaacatgcacatgcaactttatatatatattattagataatgaagacatataaggcaatgtttttggccggcattgctataaagatga |
306 |
Q |
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| T |
2825345 |
aacagaacatgcaaacatgcacatgcaactttatctatatattattagataatcaagacatataaggcaatgtttttggccggcattgctataaagatga |
2825444 |
T |
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| Q |
307 |
gaatggagtcaaagccaatagccccactatggttgtatgtcacgtctatcatttaaatacaataattacacatcttcattagtg |
390 |
Q |
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| T |
2825445 |
gagtggagtcaaagccaatagccccactatggttgtatgtcacgtctatcatttaaatacaataattacatttcttcattagtg |
2825528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 2813933 - 2813983
Alignment:
| Q |
113 |
tcttctttgtttcttattcaacttgacctctaaataggaactgttctttta |
163 |
Q |
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| T |
2813933 |
tcttctttgtttcttgttcaacttgacctataattaggcactgttctttta |
2813983 |
T |
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