View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20831_high_4 (Length: 340)
Name: NF20831_high_4
Description: NF20831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20831_high_4 |
 | |
|
| [»] scaffold0618 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 30 - 326
Target Start/End: Original strand, 44067163 - 44067459
Alignment:
| Q |
30 |
catttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaac |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44067163 |
catttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaac |
44067262 |
T |
|
| Q |
130 |
cttctgaatttatcaaaccatcaagattacttttcataacaaccgttcttgaatatttctgccatggtctgccaagatatgttttaactgaattctgaac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
44067263 |
cttctgaatttatcaaaccatcaagattacttttcataacaaccgttcttgaatgtttctgccatggtctaccaagatatgttttaaccgaattctgaac |
44067362 |
T |
|
| Q |
230 |
cgctttcaaatcatttgcagcggttatacggcagttatgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttc |
326 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44067363 |
cgctttcaaatcatttgcagtggttatacggcagttatgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttc |
44067459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 30 - 329
Target Start/End: Complemental strand, 44087946 - 44087647
Alignment:
| Q |
30 |
catttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaac |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44087946 |
catttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaac |
44087847 |
T |
|
| Q |
130 |
cttctgaatttatcaaaccatcaagattacttttcataacaaccgttcttgaatatttctgccatggtctgccaagatatgttttaactgaattctgaac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44087846 |
cttctgaatttatcaaaccatcaagattacttttcataacaaccgttcttgaatatttctgccatggtctaccaagatatgttttaactgaattctgaat |
44087747 |
T |
|
| Q |
230 |
cgctttcaaatcatttgcagcggttatacggcagttatgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttctgt |
329 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44087746 |
cgctttcaaatcacttgatgcggttatacggcagttatgtattacaattccagtgttttcatttggatctgttcttccttgtgctgttacggtgttctgt |
44087647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 30 - 327
Target Start/End: Original strand, 44092664 - 44092961
Alignment:
| Q |
30 |
catttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaac |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44092664 |
catttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaac |
44092763 |
T |
|
| Q |
130 |
cttctgaatttatcaaaccatcaagattacttttcataacaaccgttcttgaatatttctgccatggtctgccaagatatgttttaactgaattctgaac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44092764 |
cttctgaatttatcaaaccatcaagattacttttcataacaaccgttcttgaatatttctgccatggtctaccaagatatgttttaactgaattctgaat |
44092863 |
T |
|
| Q |
230 |
cgctttcaaatcatttgcagcggttatacggcagttatgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttct |
327 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44092864 |
cgctttcaaatcacttgatgcggttatacggcagttatgtattacaattccagtgttttcatttggatctgttcttccttgtgctgttacggtgttct |
44092961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 30 - 329
Target Start/End: Complemental strand, 7247 - 6948
Alignment:
| Q |
30 |
catttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaac |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7247 |
catttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaac |
7148 |
T |
|
| Q |
130 |
cttctgaatttatcaaaccatcaagattacttttcataacaaccgttcttgaatatttctgccatggtctgccaagatatgttttaactgaattctgaac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7147 |
cttctgaatttatcaaaccatcaagattacttttcataacaaccgttcttgaatatttctgccatggtctaccaagatatgttttaactgaattctgaat |
7048 |
T |
|
| Q |
230 |
cgctttcaaatcatttgcagcggttatacggcagttatgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttctgt |
329 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7047 |
cgctttcaaatcacttgatgcggttatacggcagttatgtattacaattccagtgttttcatttggatctgttcttccttgtgctgttacggtgttctgt |
6948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 8767322 - 8767261
Alignment:
| Q |
144 |
aaaccatcaagattacttttcataacaaccgttcttgaatatttctgccatggtctgccaag |
205 |
Q |
| |
|
|||||||||||| | ||||||| | |||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
8767322 |
aaaccatcaagaacagttttcatgaaaaccgttcttgaatatttttgccacggtctaccaag |
8767261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University