View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20832_high_2 (Length: 511)
Name: NF20832_high_2
Description: NF20832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20832_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 171 - 482
Target Start/End: Complemental strand, 36608381 - 36608070
Alignment:
| Q |
171 |
cttgtagtatctaaggagaatgaatcagaggaaaattctcccatcaaacaagtggctctaacggtgccaacaacagatgacccttctctaccagttctaa |
270 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36608381 |
cttgtagtatctaagaagaatgattcagaggaaaattctcccatcaaacaagtggctctaacggtgccaacaacagatgacccttctctaccagttctaa |
36608282 |
T |
|
| Q |
271 |
cattccgaatgtgggtattaggaaccctttcatgtgtcctattatcattcctaaaccagtttttctggtacagaacagaacctctcactattacagccat |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36608281 |
cattccgaatgtgggtattaggaaccctttcatgtgtcctattatcattcctaaaccagtttttctggtacagaacagaacctctcactattacagccat |
36608182 |
T |
|
| Q |
371 |
ttctgctcagattgctgttgttcctttgggtcaactcatggcttcaaaaatcacaaaacgtgttttcttcaaaggaaaatcatgggaatttacgttgaac |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36608181 |
ttctgctcagattgctgttgttcctttgggtcaactcatggcttcaaaaatcacaaaacgtgttttcttcaaaggaaaatcatgggaatttacgttgaac |
36608082 |
T |
|
| Q |
471 |
cctggtcctttc |
482 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36608081 |
cctggtcctttc |
36608070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 36608532 - 36608433
Alignment:
| Q |
22 |
catcatcagaaaacaatgataatatcacatcccctctccgtaagcaaacatgc--atatccatctccttcattttcaaatttacaatttctttcattacc |
119 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36608532 |
catcatcacaaaacaatgataatatcacatcccctctccgtaagcaaacatgcatatatccatctccttcattttcaaatttacaatttctttcattacc |
36608433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University