View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20832_high_3 (Length: 396)
Name: NF20832_high_3
Description: NF20832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20832_high_3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 367
Target Start/End: Original strand, 39450838 - 39451191
Alignment:
| Q |
14 |
gagtttggaggtttcctattcctatttcctatagaaataaacatatcaaagaacaattcnnnnnnnnnnnnnnngtaacacagtaagtgtatatcctatt |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39450838 |
gagtttggaggtttcctattcctatttcctatataaataaacatatcaaagaacaattcaaaaaataaaaaatagtaacacagtaagtgtatatcctatt |
39450937 |
T |
|
| Q |
114 |
atcctgtgcttcaagatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39450938 |
atcctgtgcttcaagatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatca |
39451037 |
T |
|
| Q |
214 |
atcgtgataaccgtctccgagtaactgttttagttatcaaattcccacacatatcagaaaatgatgtcaacactaaatcccttcctatctcagattctct |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39451038 |
atcgtgataaccgtctccgagtaactgttttagttatcaaattcccacatatatcagaaaatgatgtcaacactaaatcccttcctatctcagattctct |
39451137 |
T |
|
| Q |
314 |
caacatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggttt |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39451138 |
caacatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggttt |
39451191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 125 - 367
Target Start/End: Original strand, 39475455 - 39475697
Alignment:
| Q |
125 |
caagatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataac |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| ||||| || | ||||||||||||||||||||||||| |
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|
| T |
39475455 |
caagatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataac |
39475554 |
T |
|
| Q |
225 |
cgtctccgagtaactgttttagttatcaaattcccacacatatcagaaaatgatgtcaacactaaatcccttcctatctcagattctctcaacatcatca |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
39475555 |
cgtctccgagtaactgttttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcatca |
39475654 |
T |
|
| Q |
325 |
accttccagaagtttctcttcctccaaacaccaatccaggttt |
367 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||| |
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|
| T |
39475655 |
accttccagaagtttctcttcccccaaacaccgatccaggttt |
39475697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 97 - 355
Target Start/End: Original strand, 39471958 - 39472215
Alignment:
| Q |
97 |
taagtgtatatcctattatcctgtgcttcaagatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaatt |
196 |
Q |
| |
|
|||||||||| || ||| ||||||||| |||||||||||||||||||||||||||| |||||||||| | || | | ||| ||||||| | || || || |
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|
| T |
39471958 |
taagtgtataacc-attttcctgtgctccaagatgaagaaagcagaagtggtgtttgtcccttttccggctgagggtcatatagtttctgctctcgagtt |
39472056 |
T |
|
| Q |
197 |
cgcgaagcttctaatcaatcgtgataaccgtctccgagtaactgttttagttatcaaattcccacacatatcagaaaatgatgtcaacactaaatccctt |
296 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||| |
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|
| T |
39472057 |
tgcgaagcttctaatcaaccgtgataaccgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatccctt |
39472156 |
T |
|
| Q |
297 |
cctatctcagattctctcaacatcatcaaccttccagaagtttctcttcctccaaacac |
355 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||||||||| ||||||| | |||||||| |
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|
| T |
39472157 |
cctatctccgattcactccacatcatcaaccttccagaatgttctcttgccccaaacac |
39472215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 113 - 354
Target Start/End: Original strand, 39460187 - 39460428
Alignment:
| Q |
113 |
tatcctgtgcttcaagatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatc |
212 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| |||||||||||| ||||| |||||||||| | |
|
|
| T |
39460187 |
tatcctgtgctccaagatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagttcgcaaagcttctaacc |
39460286 |
T |
|
| Q |
213 |
aatcgtgataaccgtctccgagtaactgttttagttatcaaattcccacacatatcagaaaatgatgtcaacactaaatcccttcctatctcagattctc |
312 |
Q |
| |
|
|| |||||||| || |||||| | ||||| |||| || ||| ||||| ||| ||||||| ||||| ||||||||||| ||||| | || ||||||| |
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|
| T |
39460287 |
aaccgtgataagcgcctccgaattactgtcctagtcatgaaactcccatacacatcagaatccgatgttaacactaaatcacttcccacttctgattctc |
39460386 |
T |
|
| Q |
313 |
tcaacatcatcaaccttccagaagtttctcttcctccaaaca |
354 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39460387 |
tcgacatcatcaaccttccagaagtttctcttcccccaaaca |
39460428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 129 - 363
Target Start/End: Original strand, 39454592 - 39454826
Alignment:
| Q |
129 |
atgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataaccgtc |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |||||||| ||||||||||| ||||||||||||| |
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|
| T |
39454592 |
atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataaccgtc |
39454691 |
T |
|
| Q |
229 |
tccgagtaactgttttagttatcaaattcccacacatatcagaaaatgatgtcaacactaaatcccttcctatctcagattctctcaacatcatcaacct |
328 |
Q |
| |
|
||||| ||||||||||||| ||||||| |||||| | |||| |||||| ||| |||||| ||||| ||||| ||||| || |||||||||||| |
|
|
| T |
39454692 |
tccgaataactgttttagtcctcaaatttccacacgccactgaaactgatgtatacagtaaatctcttccaatctccgattcaatccgcatcatcaacct |
39454791 |
T |
|
| Q |
329 |
tccagaagtttctcttcctccaaacaccaatccag |
363 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||| |
|
|
| T |
39454792 |
tccagaatgctctcttcccccaaacactaatccag |
39454826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 115 - 346
Target Start/End: Complemental strand, 39464764 - 39464533
Alignment:
| Q |
115 |
tcctgtgcttcaagatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaa |
214 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||| | ||| | ||||||||||| ||||||| || ||||||||||||||||| |
|
|
| T |
39464764 |
tcctgtgcttcaaaatgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaa |
39464665 |
T |
|
| Q |
215 |
tcgtgataaccgtctccgagtaactgttttagttatcaaattcccacacatatcagaaaatgatgtcaacactaaatcccttcctatctcagattctctc |
314 |
Q |
| |
|
|||||||||||||||||| |||| | ||||| |||||| ||||||| | ||||| |||||| ||||||||||| |||| || || |||||||| |
|
|
| T |
39464664 |
ccgtgataaccgtctccgaataaccatcttagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaatccattcccatatctgattctctt |
39464565 |
T |
|
| Q |
315 |
aacatcatcaaccttccagaagtttctcttcc |
346 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |
|
|
| T |
39464564 |
aatgtcatcaaccttccagaagtttctcttcc |
39464533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 128 - 359
Target Start/End: Complemental strand, 39458511 - 39458280
Alignment:
| Q |
128 |
gatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataaccgt |
227 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| |||||||| | ||||||||||||||||| ||||| || |||||||||||||| |||||||||||| |
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|
| T |
39458511 |
gatgaagaaagcagaagtggtgattatctcttcacctggtgttggtcatctagtttccaccctcgaatttgcaaagcttctaatcaaccgtgataaccgt |
39458412 |
T |
|
| Q |
228 |
ctccgagtaactgttttagttatcaaattcccacacatatcagaaaatgatgtcaacactaaatcccttcctatctcagattctctcaacatcatcaacc |
327 |
Q |
| |
|
|||||| ||||| | || || || ||||| ||||||| | |||||| |||||| |||||||||||||| | ||| |||||||| ||||| || ||| |
|
|
| T |
39458411 |
ctccgaataactatcttggtcatgaaatttccacacacaacagaaatagatgtctacactaaatcccttgccatcgacgattctcttaacattgtcgacc |
39458312 |
T |
|
| Q |
328 |
ttccagaagtttctcttcctccaaacaccaat |
359 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||| |
|
|
| T |
39458311 |
ttccagaatgttctcttcccccaaactccaat |
39458280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 125 - 369
Target Start/End: Original strand, 39486408 - 39486658
Alignment:
| Q |
125 |
caagatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataac |
224 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||||||||| || |||||||||||||| ||||||||| |
|
|
| T |
39486408 |
caagatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaatttgcaaagcttctaatcaaccgtgataac |
39486507 |
T |
|
| Q |
225 |
cgtctccgagtaactgttttagttatcaaattcccacacatatcagaaaa------tgatgtcaacactaaatcccttcctatctcagattctctcaaca |
318 |
Q |
| |
|
||||||||| |||| | || || |||||||||||||||| |||| | |||||| |||| ||||||||||| || || ||||||||| | |
|
|
| T |
39486508 |
cgtctccgaataaccatcttggtcatcaaattcccacacaccacagatgacgatgtcgatgtctacacaaaatcccttcccatttccgattctctccagg |
39486607 |
T |
|
| Q |
319 |
tcatcaaccttccagaagtttctcttcctccaaacaccaatccaggttttg |
369 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||| | ||| |||||| |
|
|
| T |
39486608 |
tcatcaaccttccagaatgttctcttcccccaaacaccgaaccacgttttg |
39486658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 39480325 - 39480441
Alignment:
| Q |
128 |
gatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataaccgt |
227 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39480325 |
gatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataaccgt |
39480424 |
T |
|
| Q |
228 |
ctccgagtaactgtttt |
244 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
39480425 |
ctccgaataactgtttt |
39480441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 118 - 341
Target Start/End: Complemental strand, 39470984 - 39470761
Alignment:
| Q |
118 |
tgtgcttcaagatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcg |
217 |
Q |
| |
|
|||||| ||| |||||||||| ||||||||||||||||||||||| | ||| | ||||||||||| || | || ||||| |||||||||||||| | |
|
|
| T |
39470984 |
tgtgctccaacatgaagaaagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccttagagttcgccaagcttctaatcaacca |
39470885 |
T |
|
| Q |
218 |
tgataaccgtctccgagtaactgttttagttatcaaattcccacacatatcagaaaatgatgtcaacactaaatcccttcctatctcagattctctcaac |
317 |
Q |
| |
|
||||||||| ||| || ||||||| ||||| || ||||||||||||| ||||| ||||||| || |||||||| |||| ||||| ||||||||| | |
|
|
| T |
39470884 |
tgataaccgcctctgaataactgtcttagtcatgaaattcccacacactgcagaatctgatgtctacgctaaatccattcccatctctgattctctccat |
39470785 |
T |
|
| Q |
318 |
atcatcaaccttccagaagtttct |
341 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
39470784 |
gtcatcaaccttccagaagtttct |
39470761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 128 - 238
Target Start/End: Complemental strand, 43312730 - 43312620
Alignment:
| Q |
128 |
gatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataaccgt |
227 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| |||||| | ||| |||| ||||||||||| || || |||||||| ||||| |||||||||||| |
|
|
| T |
43312730 |
gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcatcaaccgtgataaccgt |
43312631 |
T |
|
| Q |
228 |
ctccgagtaac |
238 |
Q |
| |
|
||||| ||||| |
|
|
| T |
43312630 |
ctccgtgtaac |
43312620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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