View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20832_high_5 (Length: 330)
Name: NF20832_high_5
Description: NF20832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20832_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 30 - 312
Target Start/End: Complemental strand, 20899614 - 20899332
Alignment:
| Q |
30 |
ctaacaattaccacctactacttttaacatatgcaagatcatgcaaacgataccataacagctaaacaatccctgttattggcctaatatcaacaaaact |
129 |
Q |
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| T |
20899614 |
ctaacaattaccacctactacttttaacatatgcaagatcatgtaaacgataccataacagctaaacaatccctgttattggcctaatatcaacaaaact |
20899515 |
T |
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| Q |
130 |
ttgggtcatgtcctttgattaaactgcataataataaataaataacattctgaagaaaaggacggttcctattgcaaatggccaaaatacaaatggacaa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20899514 |
ttgggtcatgtcctttgattaaactgcataataataaataaaaaacattctgaagaaaaggacggttcctattgcaaatggccaaaatacaaatggacaa |
20899415 |
T |
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| Q |
230 |
ccatatcaaagctgactcagtccccacagcacagaccatgtcctatagaatataattgtggggtcacagtttctgctgctgct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
20899414 |
ccatatcaaagctgactcagtccccacagcacagaccatgtcctatggaatataattgtggggtcacagttgctgctgctgct |
20899332 |
T |
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