View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20833_high_1 (Length: 396)
Name: NF20833_high_1
Description: NF20833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20833_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 360
Target Start/End: Complemental strand, 24836446 - 24836097
Alignment:
| Q |
11 |
gagatgaagtcgaaactatttgttgcttgtgttagaagtatcttcctcgtcatttgcaatcatatgcgtcaatacattggtttttgctacattcaacatt |
110 |
Q |
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| T |
24836446 |
gagatgaagtcgaaactatttgttgcttgtgttagaagtatcttcctcgtcatttgcaatcatatgcgtcaatacattggatgttgctacattcaacatt |
24836347 |
T |
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| Q |
111 |
tctaattgttccaaactttgagcaacaaacatgagaagagtacttcaccaacatggaaatgattgatgcaatttacaacacttctttatacaaatttttc |
210 |
Q |
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| T |
24836346 |
tctaattgttccaaactttgagcaacaaacatgagaagagtacttcaccaacatggaaatgattgatgcaatttacaacacttctttatacaaatttttc |
24836247 |
T |
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| Q |
211 |
ttatttctccaaagcataataatacttgtcttctatttctccaatgtcaatctgcttgtaattgactataacatccgaaatagaatgagaaacatgattc |
310 |
Q |
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| T |
24836246 |
ttatttctccaaagcataataatacttgtcttctatttctccaatgtcaatctgcttgtaattgactataacatccgaaatagaatgagaaacatgattc |
24836147 |
T |
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| Q |
311 |
aaatttccaaatatggttaccaactagtcaactactaaaactttgttacc |
360 |
Q |
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| T |
24836146 |
aaatttccaaatatggttaccaactagtcaactactaaaactttgttacc |
24836097 |
T |
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