View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20833_high_2 (Length: 383)
Name: NF20833_high_2
Description: NF20833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20833_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 59 - 317
Target Start/End: Original strand, 46873096 - 46873354
Alignment:
| Q |
59 |
ctgtgcaagaagtattgcaatggggagaaatgtccctatggagataagtgtaaattccttcatgaagatcctgcacaatttaggggcacttatcggaaga |
158 |
Q |
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| T |
46873096 |
ctgtgcaagaagtattgcaatggggagaaatgtccctatggagataagtgtaaattccttcatgaagatcctgcacaatttaggggcacttatcggaaga |
46873195 |
T |
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| Q |
159 |
ctaagctgtgtctcaagtggaaggatacgggatattgttcctttggaaagaattgtcactttgctcatggtgaagaaggtaacaataactcattttgatt |
258 |
Q |
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| T |
46873196 |
ctaagctgtgtctcaagtggaaggatacgggatattgttcctttggaaagaattgtcactttgctcatggtgaagaaggtaacaataactcattttgatt |
46873295 |
T |
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| Q |
259 |
attggttttggttttatcatataattctactgttttatattgttcaatcatataaaata |
317 |
Q |
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| T |
46873296 |
attggttttggttttatcatataattctactgttttatattgttcaatcatataaaata |
46873354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 144 - 317
Target Start/End: Original strand, 46890593 - 46890766
Alignment:
| Q |
144 |
gcacttatcggaagactaagctgtgtctcaagtggaaggatacgggatattgttcctttggaaagaattgtcactttgctcatggtgaagaaggtaacaa |
243 |
Q |
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| T |
46890593 |
gcacttatcggaagactaagctgtgtcgcaattggaagcatacaggatattgttcctttggaatgaactgtctctttgctcatggtgaagaaggtaacaa |
46890692 |
T |
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| Q |
244 |
taactcattttgattattggttttggttttatcatataattctactgttttatattgttcaatcatataaaata |
317 |
Q |
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| T |
46890693 |
taactcattttgcttattggttttggttttatcatataattctattgctttattttgtttaattatataaaata |
46890766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 46890418 - 46890502
Alignment:
| Q |
59 |
ctgtgcaagaagtattgcaatggggagaaatgtccctatggagataagtgtaaattccttcatgaagatcctgcacaatttaggg |
143 |
Q |
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| T |
46890418 |
ctgtgcaagaattattgcaatggggaggaatgtccatatggagataactgtatattccttcatgaagatcctgcacagtttaggg |
46890502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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