View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20833_high_4 (Length: 351)
Name: NF20833_high_4
Description: NF20833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20833_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 29 - 347
Target Start/End: Original strand, 32030561 - 32030877
Alignment:
| Q |
29 |
agggtgagttgtgtctatgcaggtcatcgtacttggtttgaaaattacaaccatatatcaaatgacatatagagctggtgcattttagaagtggatggtg |
128 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32030561 |
agggtgagttgtgtct--gcaggtcatcgtacttggtttggaaattacaaccatatatcaaatgacatatagagctggtgcattttagaagtggatggtg |
32030658 |
T |
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| Q |
129 |
gttgtttggtttcattaaaatctactagaactaaaacgtggtatgtgcagaatatgtgaagtcttttactatagtattttccaaattaattctgctgcat |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
32030659 |
gttgtttggtttcattaaaatctactagaactaaaacgtggtatgtgcagaatgtgtgaattcttttactatagtattttccaaattaattcttctgcat |
32030758 |
T |
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| Q |
229 |
agtttggttgcgtcaattattgattaatggatgccttgatcgggtacaattgtggttcctttggttttagggttttgtcatttgtaattgcaactgtggc |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32030759 |
agtttggttgcgtcaattattgattaatggatgccttgatcgggtacaactgtggttcctttggttttagggttttgtcatttgtaattgcaactgtggc |
32030858 |
T |
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| Q |
329 |
atttaggtctgtggtgctg |
347 |
Q |
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|||||||| | |||||||| |
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| T |
32030859 |
atttaggtgtctggtgctg |
32030877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 29 - 347
Target Start/End: Original strand, 32039608 - 32039924
Alignment:
| Q |
29 |
agggtgagttgtgtctatgcaggtcatcgtacttggtttgaaaattacaaccatatatcaaatgacatatagagctggtgcattttagaagtggatggtg |
128 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32039608 |
agggtgagttgtgtct--gcaggtcatcgtacttggtttggaaattacaaccatatatcaaatgacatatagagctggtgcattttagaagtggatggtg |
32039705 |
T |
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| Q |
129 |
gttgtttggtttcattaaaatctactagaactaaaacgtggtatgtgcagaatatgtgaagtcttttactatagtattttccaaattaattctgctgcat |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
32039706 |
gttgtttggtttcattaaaatctactagaactaaaacgtggtatgtgcagaatgtgtgaattcttttactatagtattttccaaattaattcttctgcat |
32039805 |
T |
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| Q |
229 |
agtttggttgcgtcaattattgattaatggatgccttgatcgggtacaattgtggttcctttggttttagggttttgtcatttgtaattgcaactgtggc |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32039806 |
agtttggttgcgtcaattattgattaatggatgccttgatcgggtacaactgtggttcctttggttttagggttttgtcatttgtaattgcaactgtggc |
32039905 |
T |
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| Q |
329 |
atttaggtctgtggtgctg |
347 |
Q |
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|||||||| | |||||||| |
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| T |
32039906 |
atttaggtgtctggtgctg |
32039924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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