View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20833_high_5 (Length: 333)
Name: NF20833_high_5
Description: NF20833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20833_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 29 - 295
Target Start/End: Complemental strand, 7526719 - 7526451
Alignment:
| Q |
29 |
agaaaagttccccattatttggaacccatttgtcccaccaaaaattgatatttcttccatctccaatttgcttcaccacatgacgatgaaagtcattcca |
128 |
Q |
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| T |
7526719 |
agaagagtttcccaatatttggaacccatttgtccaaccaaaaattggtatgtcttccttctccaatttgtttcaccacatgacgttgaaagtcgttcca |
7526620 |
T |
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| Q |
129 |
taatcctgaatgagctttccaatgacaagaatcataaggtttcgagttgcacgataaattgaggtcggtatatcccttccatatttactccggagtac-- |
226 |
Q |
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| T |
7526619 |
taatcctgaaagagctttccaaagcggagaatcataaggttgagagttccacgataaattgagatcagtgttt--ctcccatatttactcaggagtacct |
7526522 |
T |
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| Q |
227 |
--cacgaaagatcatctaatttttgaataagattccacaacatcttcatgagaaaagccttattcatgatg |
295 |
Q |
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| T |
7526521 |
tgcaccaaagatcatttggtttttgaataagatttcataacatcttcatgagaaaagtctcattcatgatg |
7526451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 40183470 - 40183394
Alignment:
| Q |
14 |
ctggagaaactgtaaagaaaagttccccattatttggaacccatttgtcccaccaaaaattgatatttcttccatct |
90 |
Q |
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| T |
40183470 |
ctggagaagctggaaagaaaagttccccattatttggaacccatttgtcccaccaaaaattgatatgtcttccatct |
40183394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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