View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20834_high_5 (Length: 356)
Name: NF20834_high_5
Description: NF20834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20834_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 326
Target Start/End: Complemental strand, 39217346 - 39217034
Alignment:
| Q |
14 |
gagatacataaaaagataaatttcaagtttattccattttccaatcatcaacactaaaatgtcaattcttcctcnnnnnnncaccaagatgtcaattttc |
113 |
Q |
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| T |
39217346 |
gagatacataaaaagataaatttcaagtttattccattttccaatcatcaacactaaaatgtcaattcttcctcaaaaaaacatgaagatgtcaattttc |
39217247 |
T |
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| Q |
114 |
tcttaacaaattagataactattgagggaaacatttcctttactatctcagagagttgtctttagcaaaatttaaacaggagttgtcctatttgttnnnn |
213 |
Q |
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| T |
39217246 |
tcttaacaaatgagataactattgagggaaacatttcctttactatctcagagagttgtctttagcaaaatttaaacaagagttgtcctatttgttaaaa |
39217147 |
T |
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| Q |
214 |
nnnttcattcgaaacatttactttactatcttagagactagcaacttcaggttttcataatgaataaccaaaaccacctcattctgactgtagataagat |
313 |
Q |
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| T |
39217146 |
aaattcattcgaaacatttactttactatcttagagactagcaacttcaggttttcataacgaataaccaaaaccacctcattctgactgtagataagat |
39217047 |
T |
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| Q |
314 |
tggcagggaaagt |
326 |
Q |
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| T |
39217046 |
tggcagggaaagt |
39217034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 39453748 - 39453683
Alignment:
| Q |
228 |
catttactttactatcttagagactagcaacttcaggttttcataatgaataaccaaaaccacctc |
293 |
Q |
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| T |
39453748 |
catttcctttactatctcatagactagcaactttaggttttcatcatgaatagccataactacctc |
39453683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 39139833 - 39139782
Alignment:
| Q |
95 |
caccaagatgtcaattttctcttaacaaattagataactattgagggaaaca |
146 |
Q |
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| T |
39139833 |
caccaagatgtcaattttctcttaacaaatgatagaactgttgggggaaaca |
39139782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 124
Target Start/End: Original strand, 39471703 - 39471732
Alignment:
| Q |
95 |
caccaagatgtcaattttctcttaacaaat |
124 |
Q |
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| T |
39471703 |
caccaagatgtcaattttctcttaacaaat |
39471732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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