View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20834_high_6 (Length: 342)
Name: NF20834_high_6
Description: NF20834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20834_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 12654221 - 12654054
Alignment:
| Q |
30 |
taaagctgctaaccagacatttgaacttggcataaataggtattgtggtttcttatcttatctcttgggccttgtaatgaaattcatatattgtttgatg |
129 |
Q |
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| T |
12654221 |
taaagctgctaaccagacatttgaacttggcataaataggtactgtggtttcttatcttatatcttggaccttgtaatgaaattcatatattgtttgatg |
12654122 |
T |
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| Q |
130 |
tgttaatttgctatat----tattgtataccagttgaataactccagggaaagtgttaaatgcttttc |
193 |
Q |
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| T |
12654121 |
tgttaatttgctatatgccatattgtataccagttgaataactccagggaaagtgttaaatgcttttc |
12654054 |
T |
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Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 195 - 330
Target Start/End: Complemental strand, 46832887 - 46832739
Alignment:
| Q |
195 |
cccaaataataggggagtaaaagcttattaaccctttatt-ttttattcaatatt-------------tatcttaaacctacctattatgcaaggggtca |
280 |
Q |
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| T |
46832887 |
cccaaataacagggga-taaaaacttattaaccctttatttttttattcaatatttatgtacatactgtatcttaaacctacctattatgcaaggggtca |
46832789 |
T |
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| Q |
281 |
ggagaggatggtacttgtctattaactgcagcataacacccttctccagg |
330 |
Q |
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| T |
46832788 |
ggagaggatggtacttgtctattaactgcagcgtaacacccttctccagg |
46832739 |
T |
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