View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20834_high_7 (Length: 331)
Name: NF20834_high_7
Description: NF20834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20834_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 34 - 321
Target Start/End: Complemental strand, 48101455 - 48101168
Alignment:
| Q |
34 |
attcttagacattgcacaaacttacttatgttaccaatgcctacaaacaaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattaca |
133 |
Q |
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| T |
48101455 |
attcttagacattgcacaaacttacttgtgttgccaatgcctataaacaaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattaca |
48101356 |
T |
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| Q |
134 |
gtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaagtggaacaatcgaggaacgagtatcaaacaatggaaatagattcattgttg |
233 |
Q |
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| T |
48101355 |
gtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaaatggaacaatcgaggaacgagtatcaaacaacggaaatagattcattgttg |
48101256 |
T |
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| Q |
234 |
ccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaagaaaggaatgatatatactttttctggtaacctatg |
321 |
Q |
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| T |
48101255 |
ccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaagaaaggaatgatatatactttttctggtaacctatg |
48101168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 82 - 316
Target Start/End: Complemental strand, 48064154 - 48063920
Alignment:
| Q |
82 |
aaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttgga |
181 |
Q |
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| T |
48064154 |
aaagcagtgtgtgacagaacctaagagggcacaatatggaggaggcattatagtaaatccaggatttgatcacaacataaagggttggagagtgtttgga |
48064055 |
T |
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| Q |
182 |
agtggaacaatcgaggaacgagtatcaaacaatggaaatagattcattgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaac |
281 |
Q |
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| T |
48064054 |
aatggaacaatcgaggaacgaatatcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatggtttctcacagaaggtccaac |
48063955 |
T |
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| Q |
282 |
tgaagaaaggaatgatatatactttttctggtaac |
316 |
Q |
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| T |
48063954 |
tgaagaaaggaatgatatacatgttttctggtaac |
48063920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 86 - 321
Target Start/End: Complemental strand, 48068806 - 48068571
Alignment:
| Q |
86 |
cagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaagtg |
185 |
Q |
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|||||||| |||||||| |||| ||||||||||| || ||||||| ||||||||||||||||||||||||||| || | |||| ||||||| || |
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| T |
48068806 |
cagtgtgtcccagaacctcagagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacggtgtttgagcatg |
48068707 |
T |
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| Q |
186 |
gaacaatcgaggaacgagtatcaaacaatggaaatagattcattgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaa |
285 |
Q |
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| T |
48068706 |
gaacaatcaaggaacgaacatcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactgga |
48068607 |
T |
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| Q |
286 |
gaaaggaatgatatatactttttctggtaacctatg |
321 |
Q |
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| T |
48068606 |
gaaagaaatgatatatattttttctggtaacctatg |
48068571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 34 - 316
Target Start/End: Complemental strand, 48107871 - 48107589
Alignment:
| Q |
34 |
attcttagacattgcacaaacttacttatgttaccaatgcctacaaacaaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattaca |
133 |
Q |
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||||||| |||||||| ||| || ||| |||| |||||||| || ||| |||||| ||| ||||||| | || ||||||||||| || || |||| | |
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| T |
48107871 |
attcttaaacattgcataaattttcttgtgttgtcaatgccttggaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaattata |
48107772 |
T |
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| Q |
134 |
gtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaagtggaacaatcgaggaacgagtatcaaacaatggaaatagattcattgttg |
233 |
Q |
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|||||| | |||||||||||||||||| | || |||| ||| ||||||| ||||||||| |||||||| ||||||| ||||||||||||||||||||| |
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| T |
48107771 |
gtaaattccggatttgatcacaacatagagggttggacagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcattgttg |
48107672 |
T |
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| Q |
234 |
ccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaagaaaggaatgatatatactttttctggtaac |
316 |
Q |
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||||||| ||||||||| |||| |||||||||||||| | ||| || || |||||||| |||||||||||||||| |||||| |
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| T |
48107671 |
ccagcaaaagaacacaatcattagatagtttttcacaaacggttcagctagagaaaggattgatatatactttttcaggtaac |
48107589 |
T |
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