View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20835_high_3 (Length: 414)

Name: NF20835_high_3
Description: NF20835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20835_high_3
NF20835_high_3
[»] chr4 (51 HSPs)
chr4 (10-382)||(27570065-27570437)
chr4 (23-382)||(27420170-27420532)
chr4 (12-382)||(27425567-27425936)
chr4 (13-382)||(27415379-27415745)
chr4 (12-382)||(27565967-27566336)
chr4 (12-382)||(27412427-27412788)
chr4 (46-382)||(27423010-27423346)
chr4 (63-382)||(27563362-27563689)
chr4 (150-381)||(27444811-27445033)
chr4 (242-378)||(27527145-27527281)
chr4 (154-381)||(27557394-27557612)
chr4 (244-382)||(27468343-27468481)
chr4 (242-381)||(27506682-27506821)
chr4 (244-382)||(27475595-27475733)
chr4 (214-378)||(27585644-27585808)
chr4 (263-382)||(27503927-27504046)
chr4 (255-382)||(27524521-27524648)
chr4 (224-374)||(27497346-27497496)
chr4 (244-382)||(27514877-27515015)
chr4 (217-381)||(27486942-27487106)
chr4 (217-381)||(27526129-27526293)
chr4 (244-382)||(27508838-27508976)
chr4 (222-372)||(27554273-27554423)
chr4 (237-382)||(17970278-17970423)
chr4 (217-382)||(27500354-27500519)
chr4 (244-382)||(27489946-27490084)
chr4 (242-382)||(27478899-27479039)
chr4 (242-382)||(27485959-27486099)
chr4 (217-381)||(27502824-27502988)
chr4 (222-381)||(27498379-27498538)
chr4 (217-381)||(27476646-27476810)
chr4 (242-381)||(27424531-27424670)
chr4 (237-372)||(27431174-27431309)
chr4 (217-381)||(27501276-27501440)
chr4 (217-381)||(27505719-27505883)
chr4 (217-381)||(27513793-27513957)
chr4 (217-381)||(27523420-27523584)
chr4 (23-74)||(27516917-27516968)
chr4 (239-381)||(27414321-27414463)
chr4 (217-381)||(27469419-27469583)
chr4 (217-381)||(27479860-27480024)
chr4 (23-74)||(27466595-27466646)
chr4 (23-74)||(27473668-27473719)
chr4 (23-85)||(27557266-27557329)
chr4 (151-196)||(27498326-27498371)
chr4 (290-381)||(27411473-27411564)
chr4 (24-73)||(27431468-27431518)
chr4 (23-65)||(27445116-27445158)
chr4 (151-196)||(27501228-27501273)
chr4 (151-196)||(27516793-27516838)
chr4 (23-66)||(27508119-27508163)
[»] chr5 (3 HSPs)
chr5 (236-382)||(1756773-1756919)
chr5 (242-382)||(1754672-1754812)
chr5 (241-381)||(1754258-1754398)
[»] chr3 (11 HSPs)
chr3 (224-382)||(38024891-38025049)
chr3 (224-382)||(38031343-38031501)
chr3 (224-382)||(50911885-50912043)
chr3 (224-382)||(55084752-55084910)
chr3 (237-382)||(50904808-50904953)
chr3 (237-382)||(50909939-50910084)
chr3 (237-378)||(38043882-38044023)
chr3 (237-378)||(38040101-38040242)
chr3 (224-372)||(38033805-38033953)
chr3 (237-378)||(38028786-38028927)
chr3 (237-378)||(38036813-38036954)
[»] chr8 (3 HSPs)
chr8 (224-382)||(21607312-21607470)
chr8 (237-378)||(21604774-21604915)
chr8 (318-371)||(21634603-21634656)
[»] chr2 (1 HSPs)
chr2 (237-382)||(3073548-3073693)


Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 10 - 382
Target Start/End: Complemental strand, 27570437 - 27570065
Alignment:
Q  10 attattcttttaactatatatattcatgactgcaagcatttagaaccaacacaaatcattcacatcctaaagcattcaaatctgaaaaacttggttattg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27570437 attattcttttaactatatatattcatgactgcaagcatttagaaccaacacaaatcattcacatcctaaagcattcaaatctgaaaaacttggttattg 27570338  T
Q  110 cttaaaagtttttatttaaaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||    
T  27570337 cttaaaagtttttatttaaaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgtccccctggtatcatcagaagggcatctttttctg 27570238  T
Q  210 gaaaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatactt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27570237 gaaaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatactt 27570138  T
Q  310 aagccaaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27570137 aagccaaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 27570065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 23 - 382
Target Start/End: Original strand, 27420170 - 27420532
Alignment:
Q  23 ctatatatattcatgactgcaagcatttagaaccaacacaaatcattcacatcctaaagcattcaaatctgaaaaacttggttattgcttaaaagttt-- 120  Q
    ||||||||||||| | || ||||||||||| ||||||||||| |||||||||||||||||||||| || | |||||||||||  ||||||||||||||      
T  27420170 ctatatatattcaaggctacaagcatttaggaccaacacaaaacattcacatcctaaagcattcagatttcaaaaacttggtctttgcttaaaagtttat 27420269  T
Q  121 -ttatttaaaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatc 219  Q
     ||||||  ||||||||| |||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||| |||||||||    
T  27420270 tttatttttaaaccatttcttctaaagttttaacacatacaacaatgggttttcgtttccctggtatcatcagaaaggcatcattttctgcaaaccgatc 27420369  T
Q  220 agcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaacct 319  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||    
T  27420370 agcttcaaaatctgtggacgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatttaatccccgtatcatacttgagccaacct 27420469  T
Q  320 tcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    |||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  27420470 tcatttcaaggcttgctgagtcaagttgaggaagagtttggatatgatcatcccatgggtggc 27420532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 12 - 382
Target Start/End: Original strand, 27425567 - 27425936
Alignment:
Q  12 tattcttttaactatatatattcatgactgcaagcatttagaaccaacacaaatcattcacatcctaaagcattcaaatctgaaaaacttggttattgct 111  Q
    |||||| ||| ||||||||||| | | || ||||||||||| ||||||||||||||||||||||||||| ||||| ||| | ||||||||| || |||||    
T  27425567 tattctcttatctatatatattaaaggctacaagcatttaggaccaacacaaatcattcacatcctaaaccattccaatttcaaaaacttgcttcttgct 27425666  T
Q  112 taaaagtttttatttaaaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctgga 211  Q
    || | || ||| |||||||   | | |||||||||| ||||||||||||| |||||||||||||||  ||||||||||||||| || ||| ||||||| |    
T  27425667 tacaggtctttttttaaaactgaat-attctcaagttttaacacatacaacaatgggttttcgttttgctggtatcatcagaaaggcatcattttctgca 27425765  T
Q  212 aaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaa 311  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||  |||||||||| |    
T  27425766 aaccgatcagcttcgaaagctgtggacgtgccaaagggatatcttgcagtatatgttggagagaaacaaaagcggtatgtgatcccaatatcatacttga 27425865  T
Q  312 gccaaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
     |||||| ||||||||||||||  ||||||||  |||||||||||| ||||||||||||||||||||||||    
T  27425866 accaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggc 27425936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 13 - 382
Target Start/End: Original strand, 27415379 - 27415745
Alignment:
Q  13 attcttttaactatatatattcatgactgcaagcatttagaaccaacacaaatcattcacatcctaaagcattcaaatctgaaaaacttggttattgctt 112  Q
    ||||||| | |||| |||||||| | || ||||||||||| ||||||||||| ||||||||||||||||||||||  | | ||||||||| ||||||||     
T  27415379 attctttcatctatttatattcaaggctacaagcatttaggaccaacacaaaacattcacatcctaaagcattcagttttcaaaaacttg-ttattgcta 27415477  T
Q  113 aaaagttt-ttatttaaaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctgga 211  Q
     ||  | | |||||| ||||| |||| ||||||||| ||||||||||||| ||||||||||||| ||||| |||||||||||| |  ||| ||||||| |    
T  27415478 caatttatcttattttaaaacaatttcttctcaagttttaacacatacaacaatgggttttcgtgtccctagtatcatcagaaagtcatcattttctgca 27415577  T
Q  212 aaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaa 311  Q
    | ||||  |  |||||||| |||||||||||||||||||||||||||||| |||||||||   ||||| | ||| | |||||||||| |||||||||| |    
T  27415578 agccgagtaatttcaaaagttgtggatgtgccaaagggatatcttgcagtgtatgttgga---aaacaaaagcgatttgtgatccccatatcatacttga 27415674  T
Q  312 gccaaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
     |||||| || |||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||    
T  27415675 accaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcattccatgggtggc 27415745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 12 - 382
Target Start/End: Complemental strand, 27566336 - 27565967
Alignment:
Q  12 tattcttttaactatatatattcatgactgcaagcatttagaaccaacacaaatcattcacatcctaaagcattcaaatctg-aaaaacttggttattgc 110  Q
    |||||||||| |||||||||||||||  | ||||||||||| ||||||||||||||||||||||||||| ||||| ||| |  ||||||||| || ||||    
T  27566336 tattcttttatctatatatattcatggttacaagcatttaggaccaacacaaatcattcacatcctaaaccattccaatttccaaaaacttgcttcttgc 27566237  T
Q  111 ttaaaagtttttatttaaaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctgg 210  Q
    ||| |||| ||| ||  ||||||| || ||||||||| | ||| ||||||  ||||||||||||||||||| |||| |||| ||||| ||| |||  |||    
T  27566236 ttacaagtctttttt--aaaaccaatttttctcaagtttgaacgcatacagcaatgggttttcgtttccctagtattatcaaaagggcatcatttgttgg 27566139  T
Q  211 aaaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatactta 310  Q
    ||||||| ||| |||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||| | ||| | |||||||||| |||||||| |     
T  27566138 aaaccgagcagtttcaaaagttgtggacgtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctg 27566039  T
Q  311 agccaaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    | |||||| |  ||||||||||||||||  |||| ||||||||||   |||||||||||||| |||||||||    
T  27566038 aaccaaccattgtttcaagacttgctgatacaagttgaggaagagcatggatatgatcatccaatgggtggc 27565967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 12 - 382
Target Start/End: Original strand, 27412427 - 27412788
Alignment:
Q  12 tattcttttaactatatatattcatgactgcaagcatttagaaccaacacaaatcattcacatcctaaagcattcaaatctgaaaaacttggttattgct 111  Q
    |||||||||| ||||||||||||||| |||||||||||||| || |||||||||||||||||||||||| ||||  ||| | ||||||||| || |||||    
T  27412427 tattcttttatctatatatattcatggctgcaagcatttaggacaaacacaaatcattcacatcctaaaccattttaatttcaaaaacttgcttcttgct 27412526  T
Q  112 taaaagtttttatttaaaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctgga 211  Q
    || |||| ||  |   | ||||||||    | ||||  ||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| |    
T  27412527 tacaagtcttcct---acaaccatttgaatttaagttctaacacatacaaaaatgggttttcgtttctctggtatcatcagaagggcatcattttctgca 27412623  T
Q  212 aaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaa 311  Q
    |||||| ||| |||||||||||| ||  |||||||||||||| |||| || |||||||||||||||      |||| |||||||||  |||||||||| |    
T  27412624 aaccgagcagtttcaaaagctgttgacatgccaaagggatatattgccgtgtatgttggagagaaa------cggtttgtgatcccaatatcatacttga 27412717  T
Q  312 gccaaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
     |||||| | ||||||||||||  ||||||||||||| |||||||| |||||||||||||| |||||||||    
T  27412718 accaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggc 27412788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 46 - 382
Target Start/End: Original strand, 27423010 - 27423346
Alignment:
Q  46 catttagaaccaacacaaatcattcacatcctaaag-cattca-aatctgaaaaacttggttattgcttaaaagtttttatttaaaaaccatttattctc 143  Q
    |||||||||||||| | ||||||||||||||||||  ||||   ||| |||||||||||| ||||||||  || |||||  |  ||||||| || ||||     
T  27423010 catttagaaccaactctaatcattcacatcctaaaaacatttgcaatttgaaaaacttggctattgcttttaatttttttct--aaaaccacttcttcta 27423107  T
Q  144 aagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgcc 243  Q
    |  | ||||||||||||| ||||||| | |||||| ||||||| ||||||||||  || ||||||| ||||||| ||   |||||||||| |||  ||||    
T  27423108 actttttaacacatacaacaatgggtatccgtttctctggtattatcagaagggcctcattttctgcaaaccgagcaatatcaaaagctgcggacatgcc 27423207  T
Q  244 aaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtcaa 343  Q
    |||| |||||||||| |||||||||||| |||||||||| ||| ||||||||| | |||||||||| | |||||||||||||||||| ||| ||||||||    
T  27423208 aaagagatatcttgctgtatatgttggatagaaacagacacggcatgtgatccgcatatcatacttgaaccaaccttcatttcaagaattgttgagtcaa 27423307  T
Q  344 gctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    || ||||||||||| || ||  |||||||||||||||||    
T  27423308 gccgaggaagagtttggttacaatcatcccatgggtggc 27423346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 63 - 382
Target Start/End: Complemental strand, 27563689 - 27563362
Alignment:
Q  63 aatcattcacatcctaaagcattcaaatctgaaaaacttggttattgcttaaaagtttttat---------ttaaaaaccatttattctcaagtgttaac 153  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |         |||||||    || ||||||||| |||||    
T  27563689 aatcattcacatcctaaagcattcaaatttcaaaaacttggttattgcttaaaagtttttttgttctttttttaaaaa----ttcttctcaagttttaac 27563594  T
Q  154 acatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctt---tttctggaaaccgatcagcttcaaaagctgtggatgtgccaaaggga 250  Q
    |||  ||  ||||||||||||||| ||||||||||| ||||||  ||| |   || ||  || |||||||| | |||||| |||||| |||||||||||     
T  27563593 acactcagcaatgggttttcgtttacctggtatcattagaaggtcatcatcgtttacttcaagccgatcagttacaaaagttgtggacgtgccaaagggc 27563494  T
Q  251 tatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgagg 350  Q
    ||||||||||| || |||||||| ||||| | | |   ||||||||||||||||||||| | |||| | |  |||||||| |||||||||||||| || |    
T  27563493 tatcttgcagtgtacgttggagataaacaaaagagaattgtgatccccgtatcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaag 27563394  T
Q  351 aagagttcggatatgatcatcccatgggtggc 382  Q
    ||||||| |||||||||||||| |||||||||    
T  27563393 aagagtttggatatgatcatccaatgggtggc 27563362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 150 - 381
Target Start/End: Complemental strand, 27445033 - 27444811
Alignment:
Q  150 taacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaaggg 249  Q
    |||||||||||| |||||||||||||||  | ||||||||||||||||         ||| ||||| | || |||||||||  |||||||||||||||||    
T  27445033 taacacatacaagaatgggttttcgtttaaccggtatcatcagaaggg---------ctgcaaaccaaacatcttcaaaaggcgtggatgtgccaaaggg 27444943  T
Q  250 atatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgag 349  Q
    ||||||||||||||| ||||||||| ||  || | ||| |||||||||  |||||||||| |||||| | ||||||||||| ||  ||| |||||| |||    
T  27444942 atatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgag 27444843  T
Q  350 gaagagttcggatatgatcatcccatgggtgg 381  Q
    ||| | ||||||||||| ||||| ||||||||    
T  27444842 gaacaattcggatatgaccatccaatgggtgg 27444811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 242 - 378
Target Start/End: Original strand, 27527145 - 27527281
Alignment:
Q  242 ccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtc 341  Q
    |||||||| |||||||| || ||||||||||| |||||||  |||| |||||||||  ||||| |||||| |||||| || |||| ||| ||||||||||    
T  27527145 ccaaagggctatcttgcggtgtatgttggagataaacagaaacggtttgtgatcccaatatcacacttaaaccaaccatcgtttctagagttgctgagtc 27527244  T
Q  342 aagctgaggaagagttcggatatgatcatcccatggg 378  Q
    |||||||||||||||| ||||||||||||||||||||    
T  27527245 aagctgaggaagagtttggatatgatcatcccatggg 27527281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 381
Target Start/End: Original strand, 27557394 - 27557612
Alignment:
Q  154 acatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaagggatat 253  Q
    ||||| || ||||||||||||||| |||| |||||||||||||| |||         ||||| | || ||||||| | |||||||||||||| |||||||    
T  27557394 acatataagaatgggttttcgtttacctgttatcatcagaagggcatc---------aaaccaagcatcttcaaagggtgtggatgtgccaaggggatat 27557484  T
Q  254 cttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgaggaag 353  Q
    ||||| ||||||||||||||| ||  || | ||| |||||||||  | |||||||||| |||||| ||||||||||| ||||||| |||||||||||||     
T  27557485 cttgccgtatatgttggagaggaaatgaagaggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaac 27557584  T
Q  354 agttcggatatgatcatcccatgggtgg 381  Q
    | || | ||||| |||||| ||||||||    
T  27557585 aatttgaatatgttcatccaatgggtgg 27557612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 244 - 382
Target Start/End: Complemental strand, 27468481 - 27468343
Alignment:
Q  244 aaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtcaa 343  Q
    |||||| ||| |||| || |||||||||||||||| |  ||||| |||  |||| ||||||||||||| |||||||||||||||||||||| ||||||||    
T  27468481 aaagggctatgttgcggtgtatgttggagagaaactggtgcggtttgtagtccctgtatcatacttaaaccaaccttcatttcaagacttgttgagtcaa 27468382  T
Q  344 gctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
     | |||||||| || ||||||||||||||||||||||||    
T  27468381 tccgaggaagaatttggatatgatcatcccatgggtggc 27468343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 242 - 381
Target Start/End: Original strand, 27506682 - 27506821
Alignment:
Q  242 ccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtc 341  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||  |||||||||||| |||||| |  |||||||| |||||   ||    
T  27506682 ccaaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatc 27506781  T
Q  342 aagctgaggaagagttcggatatgatcatcccatgggtgg 381  Q
    |||| || ||||| || |||||||||||||||||||||||    
T  27506782 aagcggaagaagaatttggatatgatcatcccatgggtgg 27506821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 244 - 382
Target Start/End: Complemental strand, 27475733 - 27475595
Alignment:
Q  244 aaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtcaa 343  Q
    |||||| ||| |||| || |||||||||||||||  | |||||| |||  | || ||||||||||| |  ||||||||||||||||||||| ||||||||    
T  27475733 aaagggctatgttgccgtgtatgttggagagaaattggcgcggtttgtagttcctgtatcatacttgaatcaaccttcatttcaagacttgttgagtcaa 27475634  T
Q  344 gctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    || ||||||||||| ||||||||||||||||||||||||    
T  27475633 gccgaggaagagtttggatatgatcatcccatgggtggc 27475595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 214 - 378
Target Start/End: Original strand, 27585644 - 27585808
Alignment:
Q  214 ccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagc 313  Q
    |||||||| |||||||| |||||| ||||||||||||||||| ||||| |  ||||| || ||||| | | | | ||||||||||||||||||||| | |    
T  27585644 ccgatcagtttcaaaagttgtggacgtgccaaagggatatctcgcagtgtgcgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaac 27585743  T
Q  314 caaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatggg 378  Q
    ||||| |  |||||||| ||| |||||||||| || |||||||| |||||||||||||| |||||    
T  27585744 caaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaatggg 27585808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 263 - 382
Target Start/End: Original strand, 27503927 - 27504046
Alignment:
Q  263 tatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgaggaagagttcggat 362  Q
    |||||||||||||||  | |||||| |||  | || ||||||||||| | |||||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  27503927 tatgttggagagaaattggcgcggtttgtagttcctgtatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggat 27504026  T
Q  363 atgatcatcccatgggtggc 382  Q
    |||||||||| |||||||||    
T  27504027 atgatcatccaatgggtggc 27504046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 255 - 382
Target Start/End: Original strand, 27524521 - 27524648
Alignment:
Q  255 ttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgaggaaga 354  Q
    ||||||| |||||||||||||||| ||||||||   |  | || |||||||| || | |||||||||||||||||||||| ||| |||||||||||||||    
T  27524521 ttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaaga 27524620  T
Q  355 gttcggatatgatcatcccatgggtggc 382  Q
    ||| |||||||||||||| |||||||||    
T  27524621 gtttggatatgatcatccaatgggtggc 27524648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 224 - 374
Target Start/End: Complemental strand, 27497496 - 27497346
Alignment:
Q  224 tcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcat 323  Q
    |||||| |||| || || |||||||| ||| ||||||| ||||||||||| ||||| | ||||| |||||||||  | |||||||||| |||||| |  |    
T  27497496 tcaaaatctgtagaagttccaaagggctatgttgcagtgtatgttggagataaacaaaagcggtttgtgatccctatctcatacttaaaccaaccattgt 27497397  T
Q  324 ttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatccca 374  Q
    ||||| | ||| |||||||||||||||||||||| ||||||||||||||||    
T  27497396 ttcaatatttgttgagtcaagctgaggaagagtttggatatgatcatccca 27497346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 244 - 382
Target Start/End: Original strand, 27514877 - 27515015
Alignment:
Q  244 aaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtcaa 343  Q
    |||||| ||| |||| || |||||||||||||||| |  ||||| |||  |||| ||||||||||| |  ||||||||||||||||||||| ||||||||    
T  27514877 aaagggctatgttgcggtgtatgttggagagaaactggtgcggtttgtagtccctgtatcatacttgaatcaaccttcatttcaagacttgttgagtcaa 27514976  T
Q  344 gctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
     | |||||||| || ||||||||||||||||||||||||    
T  27514977 tccgaggaagaatttggatatgatcatcccatgggtggc 27515015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 217 - 381
Target Start/End: Original strand, 27486942 - 27487106
Alignment:
Q  217 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaa 316  Q
    |||| |||||||||||||||| || |||||||||||||| ||||| || || |||||||||  || ||||| |||||||||  |||||||||||| ||||    
T  27486942 atcatcttcaaaagctgtggacgttccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaa 27487041  T
Q  317 ccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtgg 381  Q
    || || |||||||| ||| |||  |||||||| ||| | || | |||||||||||| ||||||||    
T  27487042 ccatcgtttcaagaattgttgaaccaagctgaagaacaatttgaatatgatcatccaatgggtgg 27487106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 217 - 381
Target Start/End: Complemental strand, 27526293 - 27526129
Alignment:
Q  217 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaa 316  Q
    |||| ||||||||| ||| ||||| |||||||||||||| ||||| |||||||||||||||  || ||||| |||||| || ||||||||||| | ||||    
T  27526293 atcatcttcaaaaggtgtcgatgttccaaagggatatctagcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaa 27526194  T
Q  317 ccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtgg 381  Q
     | ||||| ||||| ||| |||| |||||||||||| | || | |||||||||||| | ||||||    
T  27526193 acctcattccaagaattgttgagccaagctgaggaacaatttgaatatgatcatccaacgggtgg 27526129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 244 - 382
Target Start/End: Original strand, 27508838 - 27508976
Alignment:
Q  244 aaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtcaa 343  Q
    |||||| ||| ||||||| |||||||||||||||| |||||| | |||  | || || ||||| || | |||||||||||||||||||||| ||| |||     
T  27508838 aaagggctatgttgcagtgtatgttggagagaaactgacgcgttttgtcgttcctgtgtcatatttgaaccaaccttcatttcaagacttgttgaatcag 27508937  T
Q  344 gctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    |||||||||||||| |||||||||||||| | |||||||    
T  27508938 gctgaggaagagtttggatatgatcatccaacgggtggc 27508976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 222 - 372
Target Start/End: Original strand, 27554273 - 27554423
Alignment:
Q  222 cttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttc 321  Q
    |||||||||  |||||||||||||||||||| ||||||||||||||||||||| ||  || ||||| ||||||  |  | || |  ||||||||||| ||    
T  27554273 cttcaaaaggagtggatgtgccaaagggataccttgcagtatatgttggagaggaaatgaagcggtttgtgatatcaatttctttgttaagccaaccatc 27554372  T
Q  322 atttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcc 372  Q
     |||||||| ||||||| ||||||||||||| | || ||||||||||||||    
T  27554373 gtttcaagaattgctgaatcaagctgaggaacaatttggatatgatcatcc 27554423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 237 - 382
Target Start/End: Original strand, 17970278 - 17970423
Alignment:
Q  237 atgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgct 336  Q
    |||||||||||||||||||||| || || ||||||||| ||  || ||||| |||||||||    |||||||| | |||| ||||||||||| |||||||    
T  17970278 atgtgccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgct 17970377  T
Q  337 gagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    |||||  || |||||||| |||||||| |||||||| |||||||||    
T  17970378 gagtcgggcagaggaagaattcggatacgatcatccaatgggtggc 17970423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 217 - 382
Target Start/End: Complemental strand, 27500519 - 27500354
Alignment:
Q  217 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaa 316  Q
    |||| |||||||| ||||||| || ||||| |||||||| ||||| || || |||||||||  || ||| | |||||||||  |||||||||||| ||||    
T  27500519 atcatcttcaaaatctgtggacgtaccaaaaggatatctagcagtgtacgtaggagagaaaatgaagcgatttgtgatccctatatcatacttaaaccaa 27500420  T
Q  317 ccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
      |||||| ||||| |||||||| ||| |||| ||| ||||||||||||| ||||| |||||||||    
T  27500419 agttcattccaagaattgctgagccaatctgaagaacagttcggatatgaccatccaatgggtggc 27500354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 382
Target Start/End: Original strand, 27489946 - 27490084
Alignment:
Q  244 aaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtcaa 343  Q
    |||||| ||| ||| ||| ||||||||||||||||| |  |||| |||  |||| || |||||||||| | |||| ||||||||||| ||| ||| ||||    
T  27489946 aaagggctatgttgtagtgtatgttggagagaaacaaaaacggtttgtagtccctgtgtcatacttaaacaaaccatcatttcaagatttgttgaatcaa 27490045  T
Q  344 gctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    || ||||||||||| |||||||||||||| |||||||||    
T  27490046 gccgaggaagagtttggatatgatcatccaatgggtggc 27490084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 242 - 382
Target Start/End: Complemental strand, 27479039 - 27478899
Alignment:
Q  242 ccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtc 341  Q
    |||||||| ||| ||||||| ||||||||||||||||||| ||||| |||  ||||  |||||||||| | |||||| |  |||||||| |||||   ||    
T  27479039 ccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatc 27478940  T
Q  342 aagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    |||| || ||||| || ||||||||||||||||||||||||    
T  27478939 aagcggaagaagaatttggatatgatcatcccatgggtggc 27478899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 242 - 382
Target Start/End: Complemental strand, 27486099 - 27485959
Alignment:
Q  242 ccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtc 341  Q
    |||||||| ||| ||||||| ||||||||||||||||||| ||||| |||  ||||  |||||||||| | |||||| |  |||||||| |||||   ||    
T  27486099 ccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatc 27486000  T
Q  342 aagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    |||| || ||||| || ||||||||||||||||||||||||    
T  27485999 aagcggaagaagaatttggatatgatcatcccatgggtggc 27485959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 217 - 381
Target Start/End: Complemental strand, 27502988 - 27502824
Alignment:
Q  217 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaa 316  Q
    |||| |||||||||   ||||||||||||| ||||||||||| || ||||| ||||||||   || ||||| |||||| ||  | ||||| || |  |||    
T  27502988 atcatcttcaaaaggcttggatgtgccaaaaggatatcttgccgtttatgtaggagagaagatgaagcggtttgtgattccaatgtcatatttgaatcaa 27502889  T
Q  317 ccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtgg 381  Q
     |||||||||||||||||||||| ||||||| |||||| || |||||||| ||||| ||||||||    
T  27502888 acttcatttcaagacttgctgagccaagctgtggaagaatttggatatgaccatccaatgggtgg 27502824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 222 - 381
Target Start/End: Original strand, 27498379 - 27498538
Alignment:
Q  222 cttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttc 321  Q
    |||||||||  |||||  |||||||||||||||| |||||||||||||||||| ||  ||  || | |||||||||  |||||||||| | |||||| ||    
T  27498379 cttcaaaaggcgtggacatgccaaagggatatctagcagtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatc 27498478  T
Q  322 atttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtgg 381  Q
     || ||||||||| |||  ||||| |||||| | |||| |||||||||||| ||||||||    
T  27498479 gttccaagacttgttgaaccaagccgaggaacaattcgaatatgatcatccaatgggtgg 27498538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 217 - 381
Target Start/End: Original strand, 27476646 - 27476810
Alignment:
Q  217 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaa 316  Q
    |||| |||||||| | ||||| || |||||||||||||| ||||| |||||||| ||||||  || ||||| |||||| || ||||||||||| | ||||    
T  27476646 atcatcttcaaaaaccgtggacgttccaaagggatatctagcagtgtatgttggtgagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaa 27476745  T
Q  317 ccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtgg 381  Q
     | ||||| |||||  ||||||| |||  ||||||| | || | |||||||||||| ||||||||    
T  27476746 acctcattccaagaactgctgagccaaagtgaggaacaatttgaatatgatcatccaatgggtgg 27476810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 381
Target Start/End: Complemental strand, 27424670 - 27424531
Alignment:
Q  242 ccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtc 341  Q
    ||||| || ||||| ||||| |||||||||||  ||  || ||||| |||||| || ||||||||||| | |||||||||||||||||| ||||| | ||    
T  27424670 ccaaaaggctatctcgcagtctatgttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatc 27424571  T
Q  342 aagctgaggaagagttcggatatgatcatcccatgggtgg 381  Q
    || |||| ||||| |  |||||||||||||| ||||||||    
T  27424570 aatctgaagaagaatatggatatgatcatccaatgggtgg 27424531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 237 - 372
Target Start/End: Complemental strand, 27431309 - 27431174
Alignment:
Q  237 atgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgct 336  Q
    ||||||||||||||||| |||||||||||||||| ||  ||  || | ||| |||||||||  |||||||||| | |||||| ||||||||||| ||| |    
T  27431309 atgtgccaaagggatatattgcagtatatgttggggatgaaatgaagaggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgtt 27431210  T
Q  337 gagtcaagctgaggaagagttcggatatgatcatcc 372  Q
    || |||||| |||||| | || |||||||| |||||    
T  27431209 gaatcaagccgaggaacaatttggatatgaccatcc 27431174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 381
Target Start/End: Original strand, 27501276 - 27501440
Alignment:
Q  217 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaa 316  Q
    |||| ||||||||| ||| || || |||||||||| ||| |||||||||||||||||| ||  ||  |||| |||||||||  |||||||||||| ||||    
T  27501276 atcatcttcaaaaggtgtcgaggttccaaagggatgtctagcagtatatgttggagaggaaatgaaacggtttgtgatcccaatatcatacttaaaccaa 27501375  T
Q  317 ccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtgg 381  Q
    || |  |||||||||||| |||  ||||| |||||| | || | ||| |||||||| | ||||||    
T  27501376 ccattgtttcaagacttgttgaaccaagccgaggaacaatttgaatacgatcatccaacgggtgg 27501440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 381
Target Start/End: Complemental strand, 27505883 - 27505719
Alignment:
Q  217 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaa 316  Q
    |||| ||||||||| | |||| ||||||||||| ||||| ||||| || || |||||||||  || ||||| |||||| || ||||||||||| | ||||    
T  27505883 atcatcttcaaaaggtttggaggtgccaaaggggtatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaa 27505784  T
Q  317 ccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtgg 381  Q
     | ||||| ||||| ||| |||  |||||||||||| | || | |||||| ||||| ||||||||    
T  27505783 acctcattccaagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatgggtgg 27505719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 381
Target Start/End: Complemental strand, 27513957 - 27513793
Alignment:
Q  217 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaa 316  Q
    |||| ||||||||||||| || |||||||| |||||||| ||||| ||||| |||||||||  || ||||| |||||||||  |||||||||| | ||||    
T  27513957 atcatcttcaaaagctgttgacgtgccaaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaa 27513858  T
Q  317 ccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtgg 381  Q
     | || || ||||| ||| |||  |||||||| ||| | |  | |||||||||||| ||||||||    
T  27513857 acctcgttccaagaattgttgaaccaagctgaagaacaatatgaatatgatcatccaatgggtgg 27513793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 381
Target Start/End: Complemental strand, 27523584 - 27523420
Alignment:
Q  217 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaa 316  Q
    |||| |||||||||||||||| || |||||||| ||||| ||||| || || |||||||||  || ||||| |||||| || |||||||| || | ||||    
T  27523584 atcatcttcaaaagctgtggacgttccaaagggctatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaa 27523485  T
Q  317 ccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtgg 381  Q
     ||||||| ||||| ||| ||||  |||| |||||| | || | |||||| ||||| ||||||||    
T  27523484 acttcattccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatccaatgggtgg 27523420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 27516968 - 27516917
Alignment:
Q  23 ctatatatattcatgactgcaagcatttagaaccaacacaaatcattcacat 74  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  27516968 ctatatatattcatggctgcaagcatttagcaccaacacaaatcattcacat 27516917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 381
Target Start/End: Complemental strand, 27414463 - 27414321
Alignment:
Q  239 gtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctga 338  Q
    |||||||| || ||||||||||| || |||||||| |||  ||  |||| |||||| || ||||||||||| | |||||| ||||||||||| || || |    
T  27414463 gtgccaaaaggctatcttgcagtctacgttggagataaaatgagacggtttgtgattcctgtatcatacttgaaccaaccctcatttcaagaattactaa 27414364  T
Q  339 gtcaagctgaggaagagttcggatatgatcatcccatgggtgg 381  Q
     |||| | || ||||| || |||||||||||||| ||||||||    
T  27414363 atcaatcagaagaagaatttggatatgatcatccaatgggtgg 27414321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 381
Target Start/End: Original strand, 27469419 - 27469583
Alignment:
Q  217 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaa 316  Q
    |||| |||||||||||||||| || |||||||||||||| ||||| || || |||||||||  || ||||| |||||||||  ||||||| || |  |||    
T  27469419 atcatcttcaaaagctgtggacgttccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctatatcatatttgaagcaa 27469518  T
Q  317 ccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtgg 381  Q
     | ||||| |||||  || |||| |||||||| ||| | || | |||||| ||||| ||||||||    
T  27469519 acatcattacaagaactgttgagccaagctgaagaacaatttgaatatgaacatccaatgggtgg 27469583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 381
Target Start/End: Original strand, 27479860 - 27480024
Alignment:
Q  217 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaa 316  Q
    |||| ||||||||| | |||| |||||||| || ||||| |||||||| || |||||||||  || ||| | |||||| || ||||||||||| | ||||    
T  27479860 atcatcttcaaaaggtttggacgtgccaaaaggctatctagcagtatacgtaggagagaaaatgaagcgttttgtgattcctgtatcatacttgaaccaa 27479959  T
Q  317 ccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtgg 381  Q
     | ||||| ||| | ||| |||  |||||||||||| | || | |||||||||||| ||||||||    
T  27479960 acatcattccaaaagttgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtgg 27480024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 27466595 - 27466646
Alignment:
Q  23 ctatatatattcatgactgcaagcatttagaaccaacacaaatcattcacat 74  Q
    ||||||||||||||| |||||||| ||||| |||||||||||||||||||||    
T  27466595 ctatatatattcatggctgcaagcctttagcaccaacacaaatcattcacat 27466646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 27473668 - 27473719
Alignment:
Q  23 ctatatatattcatgactgcaagcatttagaaccaacacaaatcattcacat 74  Q
    ||||||||||||||| |||||||| ||||| | |||||||||||||||||||    
T  27473668 ctatatatattcatggctgcaagcctttagcatcaacacaaatcattcacat 27473719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 27557266 - 27557329
Alignment:
Q  23 ctatatatattcatgactgcaagcatttagaaccaacac-aaatcattcacatcctaaagcatt 85  Q
    ||||||||||||||   ||||||||||||| |||||||| |||||||||||| |||||||||||    
T  27557266 ctatatatattcatagttgcaagcatttaggaccaacacaaaatcattcacaacctaaagcatt 27557329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 27498326 - 27498371
Alignment:
Q  151 aacacatacaaaaatgggttttcgtttccctggtatcatcagaagg 196  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||    
T  27498326 aacacatacgaaaatgggttttcgtttaccaggtatcatcagaagg 27498371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 381
Target Start/End: Complemental strand, 27411564 - 27411473
Alignment:
Q  290 gtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtgg 381  Q
    ||||| || ||||||||||| | |||||| || |||||||| || || | |||||| || ||||| || |||||||||||||| ||||||||    
T  27411564 gtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtgg 27411473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 27431518 - 27431468
Alignment:
Q  24 tatatatattcatgactgcaagcatttagaaccaacacaa-atcattcaca 73  Q
    |||||||||||||| |||||||| |||| ||||||||||| ||||||||||    
T  27431518 tatatatattcatggctgcaagcttttataaccaacacaatatcattcaca 27431468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 27445158 - 27445116
Alignment:
Q  23 ctatatatattcatgactgcaagcatttagaaccaacacaaat 65  Q
    ||||||||||| ||||||||||||||| ||||||||| |||||    
T  27445158 ctatatatattaatgactgcaagcattaagaaccaactcaaat 27445116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 27501228 - 27501273
Alignment:
Q  151 aacacatacaaaaatgggttttcgtttccctggtatcatcagaagg 196  Q
    ||||||||||| ||||||||||||||| ||||||||| | ||||||    
T  27501228 aacacatacaagaatgggttttcgtttacctggtatcctaagaagg 27501273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 27516838 - 27516793
Alignment:
Q  151 aacacatacaaaaatgggttttcgtttccctggtatcatcagaagg 196  Q
    ||||||||||| ||||||||||||||| ||| ||||||||| ||||    
T  27516838 aacacatacaacaatgggttttcgtttacctagtatcatcaaaagg 27516793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 27508163 - 27508119
Alignment:
Q  23 ctatatatattcatgactgc-aagcatttagaaccaacacaaatc 66  Q
    |||||||||||||||||||| || ||||| |||||||||||||||    
T  27508163 ctatatatattcatgactgctaaacatttcgaaccaacacaaatc 27508119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 236 - 382
Target Start/End: Complemental strand, 1756919 - 1756773
Alignment:
Q  236 gatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgc 335  Q
    ||||| |||||||| |||||||||||  |||||||||||||||||| ||||| |||||||||  |||||||||| | |||||| || |||||| |||||     
T  1756919 gatgtaccaaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgt 1756820  T
Q  336 tgagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    ||||||||||||| ||||| || ||||||||||| ||||||||||||    
T  1756819 tgagtcaagctgaagaagaatttggatatgatcaccccatgggtggc 1756773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 242 - 382
Target Start/End: Original strand, 1754672 - 1754812
Alignment:
Q  242 ccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtc 341  Q
    |||||||| ||| ||||||| ||| |||||||||||||||  ||| ||||||||||  |||||||||| |  ||||| || ||||||  |||| ||||||    
T  1754672 ccaaagggctatgttgcagtgtatattggagagaaacagaaacggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtc 1754771  T
Q  342 aagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    |||||| ||||||||| |||||||||||||| |||||||||    
T  1754772 aagctgcggaagagtttggatatgatcatccaatgggtggc 1754812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 381
Target Start/End: Complemental strand, 1754398 - 1754258
Alignment:
Q  241 gccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagt 340  Q
    |||||| |||||||| || ||||||||||||||  ||  || ||||| ||||||||||||||||||||| | |||| | ||||||||| | ||||| |      
T  1754398 gccaaaaggatatctagctgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaac 1754299  T
Q  341 caagctgaggaagagttcggatatgatcatcccatgggtgg 381  Q
     || |||||||| |||| | |||||||||||| ||||||||    
T  1754298 aaatctgaggaacagtttgaatatgatcatccgatgggtgg 1754258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 224 - 382
Target Start/End: Complemental strand, 38025049 - 38024891
Alignment:
Q  224 tcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcat 323  Q
    |||||||||||| |||| |||||||| |||||||||||||||||||||||| ||  || ||||| ||| |||||| | |||||||| | |||| |||| |    
T  38025049 tcaaaagctgtgaatgtaccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcct 38024950  T
Q  324 ttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    ||||| ||||  |||||||||| |||||||| || ||||||||||| || |||||||||    
T  38024949 ttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggc 38024891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 224 - 382
Target Start/End: Complemental strand, 38031501 - 38031343
Alignment:
Q  224 tcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcat 323  Q
    |||||||||||| |||| |||||||| |||||||||||||||||||||||| ||  || ||||| ||| |||||| | |||||||| | |||| |||| |    
T  38031501 tcaaaagctgtgaatgtaccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcct 38031402  T
Q  324 ttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    ||||| ||||  |||||||||| |||||||| || ||||||||||| || |||||||||    
T  38031401 ttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggc 38031343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 224 - 382
Target Start/End: Complemental strand, 50912043 - 50911885
Alignment:
Q  224 tcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcat 323  Q
    ||||||| |||| ||||||||||||| |||||||| |||||||||||||| ||   ||  |||| ||||||||||   |||||||| | |||| ||||||    
T  50912043 tcaaaagttgtgaatgtgccaaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcat 50911944  T
Q  324 ttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    ||||| ||||| |||||||||| |||||||| || ||||||||||| || |||||||||    
T  50911943 ttcaaaacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggc 50911885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 224 - 382
Target Start/End: Original strand, 55084752 - 55084910
Alignment:
Q  224 tcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcat 323  Q
    |||||| ||||| |||||||||| || | ||||||||| |||||||||||||||  || ||||| |||||||||  | || ||||| | |||||| ||||    
T  55084752 tcaaaatctgtgaatgtgccaaaagggtgtcttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcat 55084851  T
Q  324 ttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    ||||||||||| ||||||  || |||||||| || ||||| |||||||| |||||||||    
T  55084852 ttcaagacttgttgagtcgggcggaggaagaatttggatacgatcatccaatgggtggc 55084910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 237 - 382
Target Start/End: Complemental strand, 50904953 - 50904808
Alignment:
Q  237 atgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgct 336  Q
    ||||||||||||||||||||||||| || ||||||||  ||  || ||||| ||||||||   | || ||||| | |||| ||||||||||||||||| |    
T  50904953 atgtgccaaagggatatcttgcagtgtacgttggagaagaaatgaagcggtttgtgatccatatgtcctacttgaaccaaacttcatttcaagacttgtt 50904854  T
Q  337 gagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    ||||| ||| ||||| || ||||||||||||||||| |||||||||    
T  50904853 gagtcgagcagaggatgaattcggatatgatcatccaatgggtggc 50904808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 237 - 382
Target Start/End: Original strand, 50909939 - 50910084
Alignment:
Q  237 atgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgct 336  Q
    ||||||||||||| ||||||||||| |||||||||||| ||  |  ||||| ||| |||||| | |||||||| | |||| ||||||||||| ||||| |    
T  50909939 atgtgccaaagggttatcttgcagtgtatgttggagagcaaatgctgcggtttgttatccccatgtcatacttgaaccaagcttcatttcaaaacttgtt 50910038  T
Q  337 gagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    || |||||  |||||||| || |||||||||||||| |||||||||    
T  50910039 gaatcaagtggaggaagaatttggatatgatcatccaatgggtggc 50910084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 237 - 378
Target Start/End: Original strand, 38043882 - 38044023
Alignment:
Q  237 atgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgct 336  Q
    ||||||||||| | ||||||||||| ||  |||||||| ||  || ||||| |||||||||  | |||||||| |  ||| |||| ||||||||||||||    
T  38043882 atgtgccaaagagctatcttgcagtgtactttggagaggaaatgaagcggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgct 38043981  T
Q  337 gagtcaagctgaggaagagttcggatatgatcatcccatggg 378  Q
    ||||||||| |||||||| || |||||||||||||| |||||    
T  38043982 gagtcaagcagaggaagaatttggatatgatcatccaatggg 38044023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 378
Target Start/End: Complemental strand, 38040242 - 38040101
Alignment:
Q  237 atgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgct 336  Q
    ||||||||||||| ||||||||||| || ||||||||| ||  || ||| | ||| ||||||   |||||||| | |||| ||||||||||| || || |    
T  38040242 atgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacctgtt 38040143  T
Q  337 gagtcaagctgaggaagagttcggatatgatcatcccatggg 378  Q
    ||||||||| |||||||| ||||||||||| ||||| |||||    
T  38040142 gagtcaagccgaggaagaattcggatatgaccatccaatggg 38040101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 224 - 372
Target Start/End: Complemental strand, 38033953 - 38033805
Alignment:
Q  224 tcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcat 323  Q
    ||||||||  || ||||||||||||| ||||||||||| ||  |||||||| ||  || ||||| ||| ||||||   |||||||| | |||| ||||||    
T  38033953 tcaaaagcattgaatgtgccaaagggctatcttgcagtgtacattggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcat 38033854  T
Q  324 ttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcc 372  Q
    ||||| ||||| |||||||||| |||||||| || |||||||| |||||    
T  38033853 ttcaaaacttgttgagtcaagccgaggaagaatttggatatgaccatcc 38033805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 378
Target Start/End: Complemental strand, 38028927 - 38028786
Alignment:
Q  237 atgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgct 336  Q
    ||||||||||||| ||||||||||| || ||||||||| ||  || ||| | ||| ||||||   |||||||| | |||| ||||||||||| || || |    
T  38028927 atgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacctgtt 38028828  T
Q  337 gagtcaagctgaggaagagttcggatatgatcatcccatggg 378  Q
    ||||||||| |||||||| || |||||||| ||||| |||||    
T  38028827 gagtcaagccgaggaagaatttggatatgaccatccaatggg 38028786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 378
Target Start/End: Complemental strand, 38036954 - 38036813
Alignment:
Q  237 atgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgct 336  Q
    ||||||||||||| ||||||||||| || ||||||||| ||  ||  |||| |||  ||||| |  ||||||| | |||| ||||||||||| | ||| |    
T  38036954 atgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaaacggtttgttgtccccatgccatacttgaaccaagcttcatttcaaaatttgtt 38036855  T
Q  337 gagtcaagctgaggaagagttcggatatgatcatcccatggg 378  Q
    ||||||||| |||||||| ||||||||||| ||||| |||||    
T  38036854 gagtcaagccgaggaagaattcggatatgaccatccaatggg 38036813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 224 - 382
Target Start/End: Complemental strand, 21607470 - 21607312
Alignment:
Q  224 tcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcat 323  Q
    ||||||| |||| |||| ||||||||||||||||| ||||||||||||||| ||  || ||||| ||| |||||| | |||||||| | || | |||| |    
T  21607470 tcaaaagttgtgaatgtaccaaagggatatcttgcggtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccgagcttcct 21607371  T
Q  324 ttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    ||||| ||||  |||||||||| |||||||| || ||||||||||| || |||||||||    
T  21607370 ttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggc 21607312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 378
Target Start/End: Complemental strand, 21604915 - 21604774
Alignment:
Q  237 atgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgct 336  Q
    ||||||||||||| ||||||||||| || || |||||| ||  || ||| | ||| ||||||   |||||||| | |||| ||||||||||| || || |    
T  21604915 atgtgccaaagggctatcttgcagtgtaagtaggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacatgtt 21604816  T
Q  337 gagtcaagctgaggaagagttcggatatgatcatcccatggg 378  Q
    ||||||||  |||||||| || |||||||| ||||| |||||    
T  21604815 gagtcaagacgaggaagaattaggatatgaccatccaatggg 21604774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 21634603 - 21634656
Alignment:
Q  318 cttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatc 371  Q
    |||| ||||||||||||||||||||||| |||||||| || |||||||||||||    
T  21634603 cttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatc 21634656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 237 - 382
Target Start/End: Original strand, 3073548 - 3073693
Alignment:
Q  237 atgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgct 336  Q
    |||||||||||||||||||||| || || ||||||||| ||  || ||||| |||||||||    |||||||| | |||| ||||||||||| |||||||    
T  3073548 atgtgccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgct 3073647  T
Q  337 gagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 382  Q
    |||||  || |||||||| |||||||| |||||||| |||||||||    
T  3073648 gagtcgggcagaggaagaattcggatacgatcatccaatgggtggc 3073693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University