View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20835_high_4 (Length: 341)

Name: NF20835_high_4
Description: NF20835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20835_high_4
NF20835_high_4
[»] chr5 (3 HSPs)
chr5 (11-341)||(1350482-1350786)
chr5 (304-341)||(27212574-27212611)
chr5 (248-289)||(18810079-18810120)
[»] chr1 (5 HSPs)
chr1 (245-341)||(27794703-27794796)
chr1 (300-341)||(9446276-9446317)
chr1 (304-340)||(18583763-18583799)
chr1 (304-340)||(30829674-30829710)
chr1 (245-289)||(45568148-45568192)
[»] chr7 (5 HSPs)
chr7 (245-339)||(26555243-26555336)
chr7 (306-341)||(31985728-31985763)
chr7 (243-290)||(43744716-43744763)
chr7 (253-290)||(24686216-24686253)
chr7 (245-290)||(33952010-33952055)
[»] chr4 (3 HSPs)
chr4 (300-341)||(3703468-3703509)
chr4 (249-289)||(16024954-16024994)
chr4 (304-340)||(41413294-41413330)
[»] chr6 (1 HSPs)
chr6 (248-290)||(16396394-16396436)
[»] chr3 (1 HSPs)
chr3 (245-290)||(36401841-36401886)
[»] chr2 (2 HSPs)
chr2 (304-341)||(5507320-5507357)
chr2 (301-341)||(34517002-34517042)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 11 - 341
Target Start/End: Complemental strand, 1350786 - 1350482
Alignment:
Q  11 caaagggtgtatgcctagtgttttgagacagttctgagaacatggcgatgatagaaagtgagtgagtgacgcaaactggtgtctatgtcgtcgacggcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1350786 caaagggtgtatgcctagtgttttgagacagttctgagaacatggcgatgatagaaagtgagtgagtgacgcaaactggtgtctatgtcgtcgacggcaa 1350687  T
Q  111 aaggctgggggcttgaagtgggtgaaggtcgttatgaaatgcagaggtgttgattgctaggtcgggaatgaagatgatagtgaaggtcgttatgaaatgc 210  Q
    ||||||  |||||||| |||| ||||||| || | | |   |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||      
T  1350686 aaggct--gggcttgacgtggatgaaggttgtgaggga---cagaggtgttgattgctaggtcgggaatgaagatgatagtgaaggt-gttatgaaat-- 1350595  T
Q  211 ggggttagggtttatgtgggctaaggaatttatatttgactattacttttctcaccctattcatttcctcgcgcacccta-nnnnnnnnncttccaaaaa 309  Q
                       ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||           |||||||||    
T  1350594 -------------------gctaaggaatttatatttgactattacttttctcatcctattcatttcctcgcgcaccctattttattttttttccaaaaa 1350514  T
Q  310 tgcccttgaaattttcggatttcataatccga 341  Q
    ||||||||||||||||||||||||||||||||    
T  1350513 tgcccttgaaattttcggatttcataatccga 1350482  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 27212574 - 27212611
Alignment:
Q  304 caaaaatgcccttgaaattttcggatttcataatccga 341  Q
    |||||||||| |||||||||||||||||||||||||||    
T  27212574 caaaaatgcctttgaaattttcggatttcataatccga 27212611  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 18810120 - 18810079
Alignment:
Q  248 gactattacttttctcaccctattcatttcctcgcgcaccct 289  Q
    |||||||||||||| |||||||| ||||||||||||| ||||    
T  18810120 gactattacttttcccaccctatgcatttcctcgcgcgccct 18810079  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 245 - 341
Target Start/End: Original strand, 27794703 - 27794796
Alignment:
Q  245 tttgactattacttttctcaccctattcatttcctcgcgcaccctannnnnnnnncttccaaaaatgcccttgaaattttcggatttcataatccga 341  Q
    ||||||||||||||| | |||||||||||||||||||||| || ||          || ||||||||||||||||||||||||||||||||||||||    
T  27794703 tttgactattactttacccaccctattcatttcctcgcgcgccttattatttt---tttcaaaaatgcccttgaaattttcggatttcataatccga 27794796  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 9446317 - 9446276
Alignment:
Q  300 cttccaaaaatgcccttgaaattttcggatttcataatccga 341  Q
    ||||||||||||||||||| |||||||||||| | |||||||    
T  9446317 cttccaaaaatgcccttgagattttcggattttaaaatccga 9446276  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 18583799 - 18583763
Alignment:
Q  304 caaaaatgcccttgaaattttcggatttcataatccg 340  Q
    |||||||||||||||  ||||||||||||||||||||    
T  18583799 caaaaatgcccttgaggttttcggatttcataatccg 18583763  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 30829710 - 30829674
Alignment:
Q  304 caaaaatgcccttgaaattttcggatttcataatccg 340  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  30829710 caaaaatgcccttgaagtttccggatttcataatccg 30829674  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 45568192 - 45568148
Alignment:
Q  245 tttgactattacttttctcaccctattcatttcctcgcgcaccct 289  Q
    ||||||||||||||||| ||||| || | ||||||||||||||||    
T  45568192 tttgactattacttttcccacccaatgcttttcctcgcgcaccct 45568148  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 339
Target Start/End: Complemental strand, 26555336 - 26555243
Alignment:
Q  245 tttgactattacttttctcaccctattcatttcctcgcgcaccctannnnnnnnncttccaaaaatgcccttgaaattttcggatttcataatcc 339  Q
    ||||||||||| ||||| ||||||||||||||| |||||| |||||         |||||||||||| |||||||||||| ||||||||||||||    
T  26555336 tttgactattagttttcccaccctattcatttcttcgcgcgccctatttgtttt-cttccaaaaatgtccttgaaatttttggatttcataatcc 26555243  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 341
Target Start/End: Complemental strand, 31985763 - 31985728
Alignment:
Q  306 aaaatgcccttgaaattttcggatttcataatccga 341  Q
    ||||||||||||||||||||||||||||||||||||    
T  31985763 aaaatgcccttgaaattttcggatttcataatccga 31985728  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 43744716 - 43744763
Alignment:
Q  243 tatttgactattacttttctcaccctattcatttcctcgcgcacccta 290  Q
    |||||||||||||||||||||||||||  | ||||||||||| |||||    
T  43744716 tatttgactattacttttctcaccctaagcctttcctcgcgcgcccta 43744763  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 24686216 - 24686253
Alignment:
Q  253 ttacttttctcaccctattcatttcctcgcgcacccta 290  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  24686216 ttacttttctcaccttattcatttcctcgcgcgcccta 24686253  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 33952055 - 33952010
Alignment:
Q  245 tttgactattacttttctcaccctattcatttcctcgcgcacccta 290  Q
    ||||||||||||||||| |||||||| | ||||||||||| |||||    
T  33952055 tttgactattacttttcccaccctatgcctttcctcgcgcgcccta 33952010  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 3703509 - 3703468
Alignment:
Q  300 cttccaaaaatgcccttgaaattttcggatttcataatccga 341  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  3703509 cttccaaaaatgcccttgaagtttccggatttcataatccga 3703468  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 16024994 - 16024954
Alignment:
Q  249 actattacttttctcaccctattcatttcctcgcgcaccct 289  Q
    |||||||||||||||||||||| | ||||||||||| ||||    
T  16024994 actattacttttctcaccctatgcctttcctcgcgcgccct 16024954  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 41413330 - 41413294
Alignment:
Q  304 caaaaatgcccttgaaattttcggatttcataatccg 340  Q
    |||||||| |||||| |||||||||||||||||||||    
T  41413330 caaaaatgtccttgagattttcggatttcataatccg 41413294  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 290
Target Start/End: Complemental strand, 16396436 - 16396394
Alignment:
Q  248 gactattacttttctcaccctattcatttcctcgcgcacccta 290  Q
    |||||||||||||| |||||||| ||||||||||||| |||||    
T  16396436 gactattacttttcccaccctatgcatttcctcgcgcgcccta 16396394  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 36401841 - 36401886
Alignment:
Q  245 tttgactattacttttctcaccctattcatttcctcgcgcacccta 290  Q
    |||||||||||||||||||||| ||| | ||||||||||| |||||    
T  36401841 tttgactattacttttctcaccttatgcctttcctcgcgcgcccta 36401886  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 5507320 - 5507357
Alignment:
Q  304 caaaaatgcccttgaaattttcggatttcataatccga 341  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  5507320 caaaaatgcccttgaagttttcgggtttcataatccga 5507357  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 34517002 - 34517042
Alignment:
Q  301 ttccaaaaatgcccttgaaattttcggatttcataatccga 341  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  34517002 ttccaaaaatgcctttgaagttttcggatttcatattccga 34517042  T

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