View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20835_high_5 (Length: 338)
Name: NF20835_high_5
Description: NF20835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20835_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 59 - 309
Target Start/End: Complemental strand, 43764736 - 43764478
Alignment:
| Q |
59 |
ctgtggttaattcaataacatgagttaaccaaattttcattataaacaagttaatttatattcaattaaattaaccatattttttcacgtgattcaccat |
158 |
Q |
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| T |
43764736 |
ctgtggttaattcaatcacatgagttaaccaaattttcatcataaacaagttaatttatattcaattaaattaaccatattttttcacgtgattcaccat |
43764637 |
T |
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| Q |
159 |
gaaaaaataggtgtgaaacatttttataaagatatcaaa--------taaagcaatagctgttcagtatattataaactacgcaaatcacgtggactaaa |
250 |
Q |
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| T |
43764636 |
gaaaaaataggtgtgaaacatttttataaagatatcaaataaacaaataaagcaatagctgttcagtatattataaactacgcaaatcacgtggactaaa |
43764537 |
T |
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| Q |
251 |
taatttataattttgaagaaaaagaaatttcattggtaacctcatattagtgacctatg |
309 |
Q |
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| T |
43764536 |
taatttataattttgaagaaaaagaaatttcattggtaacctcatattagtgacctatg |
43764478 |
T |
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