View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20835_high_6 (Length: 316)
Name: NF20835_high_6
Description: NF20835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20835_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 27693443 - 27693754
Alignment:
| Q |
1 |
aataaaccaatgcatatgatagaag-----tgtcttttaactaaatgtgtatctagtgcgnnnnnnnnnnnacttacgcaagagaatgaagagaaataga |
95 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
27693443 |
aataaaccaatgcatatgatagaagctaagtgtcttttaactaaatgtgtatctagtgcgtttttttttttacttacgcaagagaatgaagaaaaataga |
27693542 |
T |
|
| Q |
96 |
gcgcgcactgctgtatcgtatatcatgctgcggtatgacaattgttcctcttcccggtcacggtctctgtcttgctgatgctgttcacagcgttttggtc |
195 |
Q |
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|||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27693543 |
gcgcccattgctgtatcgtatatcatgctggggtatgacaattgttcctcttcccggtcacggtctctgtcttgctgatgctgttcacagcgttttggtc |
27693642 |
T |
|
| Q |
196 |
gccaacgaagctcaattccgttgacatactccctgtatacatctggataacgacacttgctgctattacatttcagctttccatcccagctactcataat |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27693643 |
gccaacgaagctcaattccgttgacatactccctgtatacatctggataaccacacttgctgctattacatttcagctttccatcccagctactcataat |
27693742 |
T |
|
| Q |
296 |
taccttcatctc |
307 |
Q |
| |
|
|||||||||||| |
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| T |
27693743 |
taccttcatctc |
27693754 |
T |
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