View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20835_high_7 (Length: 313)
Name: NF20835_high_7
Description: NF20835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20835_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 16050008 - 16050299
Alignment:
| Q |
1 |
taaaagtttattgctttgataacatcatttaaatacctttttaacacttaagagttgannnnnnnattattaaattgtaattatattgttaatttctcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
16050008 |
taaaagtttattgctttgataacatcatttaaatacctttttaacacttaagagttgatttttttattattaaattgtagttatattgttaatttctcta |
16050107 |
T |
|
| Q |
101 |
aggtagaacaatttaccaaaatttgtctgttagctcactcaattaaccagttaggcataatatcgatctcaaataaatacttttattcccatcaaacatt |
200 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
16050108 |
aggtagaacaatgtaccaagttttgtctgttagctcactcaattaaccagttaggcataatatggatctcaaataaatacttttattcccatcaaacatt |
16050207 |
T |
|
| Q |
201 |
aattaaattttaatttttatagcctttcgtgatagagaagggacaaaatacccattcagaaataatagtgaatgatatgtccggtgatgatg |
292 |
Q |
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| T |
16050208 |
aattaaattttaatttttttagcctttcgtgatagagtagggacaaaatacccaaagagaaataatagtgattgatatgtccggtgatgatg |
16050299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 254
Target Start/End: Original strand, 16030054 - 16030290
Alignment:
| Q |
3 |
aaagtttattgctttgataacatcatttaaatacctttttaacacttaagagttgannnnnnnattattaaattgtaattatattgttaatt-tctctaa |
101 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| |||||||||||| | |||||||||||| | ||||||| |
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| T |
16030054 |
aaagtttattgctttgttaacatcatttaaatacttttttaacactt--gagttgaaaaaataattattaaattgaagttatattgttaaatgtctctaa |
16030151 |
T |
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| Q |
102 |
ggtagaacaatttaccaaaatttgtctgttagctcactcaattaaccagttaggcataatatcgatctcaaataaatacttttattcccatcaaacatta |
201 |
Q |
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| T |
16030152 |
ggtagatcaatgaaccaagctt-gtccgttagctcagtcaattaactatttttgcataatat--------------tttttttattcccatcaaacattc |
16030236 |
T |
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| Q |
202 |
attaaa-ttttaatttttatagcctttcgtgatagagaagggacaaaataccca |
254 |
Q |
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| T |
16030237 |
attaaaatttttatttttttagcctatcgtgatagagaagggacaaaataccca |
16030290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 254
Target Start/End: Original strand, 16061418 - 16061542
Alignment:
| Q |
130 |
ttagctcactcaattaaccagttaggcataatatcgatctcaaataaatacttttattcccatcaaacattaattaaattttaatttttatagcctttcg |
229 |
Q |
| |
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||||| |||||||||||||||||| |||||||| ||||||||||||| | |||| ||||||||| ||| | || ||||| |||| |||||| || |
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| T |
16061418 |
ttagcgcactcaattaaccagttaagcataatagagatctcaaataaaaaaatttaagcccatcaaaaatttagtagattttttattttttagcctatca |
16061517 |
T |
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| Q |
230 |
tgatagagaagggacaaaataccca |
254 |
Q |
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| T |
16061518 |
tgataaagaggggacaaaataccca |
16061542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 251
Target Start/End: Original strand, 15814283 - 15814402
Alignment:
| Q |
130 |
ttagctcactcaattaaccagttaggcataatatcgatctcaaataaatacttttattcccatcaaacattaattaaattttaatttttatagcctttcg |
229 |
Q |
| |
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|||||||||||||||||| || || |||||||| | |||||| ||||| ||| || ||||| ||| ||| |||| ||||| |||||| ||||||| |
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| T |
15814283 |
ttagctcactcaattaactagataagcataataaagttctcaactaaattttttgatgcccataaaaaattcattagtttttatttttta--gcctttca |
15814380 |
T |
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| Q |
230 |
tgatagagaagggacaaaatac |
251 |
Q |
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||||| |||||||||||||||| |
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| T |
15814381 |
tgataaagaagggacaaaatac |
15814402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 16055206 - 16055253
Alignment:
| Q |
130 |
ttagctcactcaattaaccagttaggcataatatcgatctcaaataaa |
177 |
Q |
| |
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||||| |||||||||||||||||| |||||||| ||||||||||||| |
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| T |
16055206 |
ttagcgcactcaattaaccagttaagcataataaagatctcaaataaa |
16055253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 271
Target Start/End: Complemental strand, 7771081 - 7770944
Alignment:
| Q |
130 |
ttagctcactcaattaaccagttaggcataatatcgatctcaaataaatacttttattcccatcaaacattaattaaattttaatttttatagcctttcg |
229 |
Q |
| |
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|||||||||||| || |||||||| | |||||| |||||||||||||| ||| || || | ||||||||| || ||||| |||| ||||||||| |
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| T |
7771081 |
ttagctcactcatttgaccagttaagtataataaagatctcaaataaattttttgatcccgaacaaacatta--tatttttta--ttttttagcctttca |
7770986 |
T |
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| Q |
230 |
tgatagagaagggacaaaatacccattcagaaataatagtga |
271 |
Q |
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| T |
7770985 |
taatagagaagggacaaaatacctaaaaagaaataatagtga |
7770944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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