View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20835_high_8 (Length: 313)

Name: NF20835_high_8
Description: NF20835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20835_high_8
NF20835_high_8
[»] chr4 (44 HSPs)
chr4 (66-283)||(27411473-27411690)
chr4 (40-283)||(27571503-27571746)
chr4 (40-283)||(27419088-27419331)
chr4 (59-264)||(27421971-27422176)
chr4 (54-283)||(27414321-27414550)
chr4 (59-283)||(27567154-27567378)
chr4 (59-283)||(27424531-27424755)
chr4 (137-283)||(27556396-27556542)
chr4 (138-284)||(27478899-27479045)
chr4 (138-284)||(27485959-27486105)
chr4 (186-283)||(27506724-27506821)
chr4 (185-284)||(27412689-27412788)
chr4 (144-283)||(27486967-27487106)
chr4 (138-280)||(27527139-27527281)
chr4 (202-284)||(27563362-27563444)
chr4 (187-283)||(27444811-27444907)
chr4 (187-283)||(27557516-27557612)
chr4 (187-274)||(27431174-27431261)
chr4 (144-283)||(27513793-27513932)
chr4 (189-280)||(27585717-27585808)
chr4 (186-284)||(27425838-27425936)
chr4 (209-283)||(27595434-27595508)
chr4 (144-283)||(27526129-27526268)
chr4 (202-284)||(27503964-27504046)
chr4 (202-284)||(27524566-27524648)
chr4 (142-283)||(27559257-27559398)
chr4 (204-284)||(27490004-27490084)
chr4 (179-283)||(27501336-27501440)
chr4 (189-284)||(27415650-27415745)
chr4 (144-283)||(27476671-27476810)
chr4 (144-283)||(27479885-27480024)
chr4 (144-283)||(27505719-27505858)
chr4 (202-284)||(27468343-27468425)
chr4 (202-284)||(27475595-27475677)
chr4 (202-284)||(27514933-27515015)
chr4 (137-273)||(27446124-27446260)
chr4 (138-274)||(27497348-27497484)
chr4 (144-283)||(27498399-27498538)
chr4 (215-274)||(27554364-27554423)
chr4 (202-284)||(27420450-27420532)
chr4 (202-284)||(27423264-27423346)
chr4 (202-284)||(27570065-27570147)
chr4 (186-283)||(27502824-27502921)
chr4 (204-284)||(27508896-27508976)
[»] chr5 (3 HSPs)
chr5 (144-284)||(1756773-1756913)
chr5 (129-274)||(1756021-1756166)
chr5 (144-283)||(1754258-1754397)
[»] chr3 (11 HSPs)
chr3 (138-235)||(38032260-38032357)
chr3 (138-280)||(38038525-38038667)
chr3 (138-283)||(50913474-50913619)
chr3 (144-284)||(55084770-55084910)
chr3 (138-235)||(38027433-38027530)
chr3 (138-283)||(38035033-38035178)
chr3 (144-284)||(38024891-38025031)
chr3 (144-284)||(38031343-38031483)
chr3 (144-284)||(50911885-50912025)
chr3 (186-280)||(38043929-38044023)
chr3 (204-284)||(50910004-50910084)
[»] chr8 (3 HSPs)
chr8 (138-280)||(21608235-21608377)
chr8 (242-284)||(21607312-21607354)
chr8 (225-273)||(21634608-21634656)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 66 - 283
Target Start/End: Complemental strand, 27411690 - 27411473
Alignment:
Q  66 atgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctcgcagtgt 165  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27411690 atgggtttccgcatagcaaagcttattagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctcgcagtct 27411591  T
Q  166 atgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggata 265  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  27411590 atgttggagatagaatgagacggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggata 27411491  T
Q  266 tgatcatcctatgggtgg 283  Q
    ||||||||||||||||||    
T  27411490 tgatcatcctatgggtgg 27411473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 40 - 283
Target Start/End: Original strand, 27571503 - 27571746
Alignment:
Q  40 gtgaggaaccataaataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttga 139  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||    
T  27571503 gtgaggaaccataaatactaaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagagactgccaagggacttga 27571602  T
Q  140 agtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattacta 239  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||| ||||||| |||| ||| ||||  |||||||||||||||    
T  27571603 agtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattacta 27571702  T
Q  240 aatcaagcagaagaagaatttggatatgatcatcctatgggtgg 283  Q
    |||||| |||||||||||||||||||||||||||| ||||||||    
T  27571703 aatcaatcagaagaagaatttggatatgatcatccaatgggtgg 27571746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 40 - 283
Target Start/End: Complemental strand, 27419331 - 27419088
Alignment:
Q  40 gtgaggaaccataaataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttga 139  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||    
T  27419331 gtgaggagccatacataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagagactgccaagggacttga 27419232  T
Q  140 agtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattacta 239  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||| ||||||| |||| ||| ||||  |||||||||||||||    
T  27419231 agtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattacta 27419132  T
Q  240 aatcaagcagaagaagaatttggatatgatcatcctatgggtgg 283  Q
    |||||| |||||||||||||||||||||||||||| ||||||||    
T  27419131 aatcaatcagaagaagaatttggatatgatcatccaatgggtgg 27419088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 59 - 264
Target Start/End: Complemental strand, 27422176 - 27421971
Alignment:
Q  59 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctc 158  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||| |||| ||||||||||||| |||||||||||||||||||||||    
T  27422176 aaaaacaatgggtttccgcatagcaaaacttatcagaatgccatcattttcctcaacgcaagcatctaccaagggatttgaagtcccaaaaggctatctc 27422077  T
Q  159 gcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 258  Q
    ||||| |||||||| |||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27422076 gcagtctatgttggagatagaatgaaacggttcgtgattccagtatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 27421977  T
Q  259 ttggat 264  Q
    ||||||    
T  27421976 ttggat 27421971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 54 - 283
Target Start/End: Complemental strand, 27414550 - 27414321
Alignment:
Q  54 ataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggct 153  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||| ||||| ||||||| ||||||| ||||||||||    
T  27414550 ataaaaaaaacaatgggtttccgcatagcaaagcttatcagaaagccatcattttcgtcaacacaagcatctagcaagggatttgaagtgccaaaaggct 27414451  T
Q  154 atctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaaga 253  Q
    |||| ||||| || ||||| |||| |||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||||||||| |||||||    
T  27414450 atcttgcagtctacgttggagataaaatgagacggtttgtgattcctgtatcatacttgaaccaaccctcatttcaagaattactaaatcaatcagaaga 27414351  T
Q  254 agaatttggatatgatcatcctatgggtgg 283  Q
    ||||||||||||||||||||| ||||||||    
T  27414350 agaatttggatatgatcatccaatgggtgg 27414321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 59 - 283
Target Start/End: Original strand, 27567154 - 27567378
Alignment:
Q  59 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctc 158  Q
    |||||||||||||||||| ||||| |   |||||| || | |||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||    
T  27567154 aaaaacaatgggtttccgtatagccagtattatcaaaagggcatcattttccaaaactcaaggatctagcaagggatttgaagtcccaaaaggctatctc 27567253  T
Q  159 gcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 258  Q
    ||||| |||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||    
T  27567254 gcagtctatgttggagatagaatgagacggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaagaagaat 27567353  T
Q  259 ttggatatgatcatcctatgggtgg 283  Q
    |||| ||||||||||| ||||||||    
T  27567354 ttggttatgatcatccaatgggtgg 27567378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 59 - 283
Target Start/End: Complemental strand, 27424755 - 27424531
Alignment:
Q  59 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctc 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| |||||  || ||| | |||||||||||||||||||||    
T  27424755 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttcgtcaacacaagcatctagtaaaggattcgaagtcccaaaaggctatctc 27424656  T
Q  159 gcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 258  Q
    ||||| |||||||| |||  |||||| ||||||||||||||| ||||||||||||||||||| | |||||||||||| ||||||||| | ||||||||||    
T  27424655 gcagtctatgttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaagaagaat 27424556  T
Q  259 ttggatatgatcatcctatgggtgg 283  Q
     ||||||||||||||| ||||||||    
T  27424555 atggatatgatcatccaatgggtgg 27424531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 137 - 283
Target Start/End: Complemental strand, 27556542 - 27556396
Alignment:
Q  137 tgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaatta 236  Q
    ||||||||||||||||||||||||||| |||||||| || | |||||  || |||||||||||  | ||||  ||||||||||| | |||||||||||||    
T  27556542 tgaagtcccaaaaggctatctcgcagtttatgttggagaaaaaatgaagcgatttgtgattcccatttcattattgaaccaaccttcatttcaagaatta 27556443  T
Q  237 ctaaatcaagcagaagaagaatttggatatgatcatcctatgggtgg 283  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||    
T  27556442 ctacatcaagcagaagaagaatttggatatgatcattctatgggtgg 27556396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 138 - 284
Target Start/End: Complemental strand, 27479045 - 27478899
Alignment:
Q  138 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 237  Q
    ||||| ||||| |||||| | |||||||||||||| || | |  ||  ||||||||  | ||| |||||||||||||||||||||| ||||||||||| |    
T  27479045 gaagttccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgc 27478946  T
Q  238 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    || ||||||| |||||||||||||||||||||||||| |||||||||    
T  27478945 tacatcaagcggaagaagaatttggatatgatcatcccatgggtggc 27478899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 138 - 284
Target Start/End: Complemental strand, 27486105 - 27485959
Alignment:
Q  138 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 237  Q
    ||||| ||||| |||||| | |||||||||||||| || | |  ||  ||||||||  | ||| |||||||||||||||||||||| ||||||||||| |    
T  27486105 gaagttccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgc 27486006  T
Q  238 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    || ||||||| |||||||||||||||||||||||||| |||||||||    
T  27486005 tacatcaagcggaagaagaatttggatatgatcatcccatgggtggc 27485959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 186 - 283
Target Start/End: Original strand, 27506724 - 27506821
Alignment:
Q  186 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtgg 283  Q
    ||||||||||| ||| |||||||||| ||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||    
T  27506724 cggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtgg 27506821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 185 - 284
Target Start/End: Original strand, 27412689 - 27412788
Alignment:
Q  185 acggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||| ||| | | |||||| |||||||| ||||||||||||||||| |||||||||    
T  27412689 acggtttgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggc 27412788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 283
Target Start/End: Original strand, 27486967 - 27487106
Alignment:
Q  144 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 243  Q
    ||||| || ||||| |||||||| || || || | |||||  ||||||||||| || ||||||||||| ||||||||||  |||||||||||  | || |    
T  27486967 ccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttgaacc 27487066  T
Q  244 aagcagaagaagaatttggatatgatcatcctatgggtgg 283  Q
    |||| |||||| |||||| |||||||||||| ||||||||    
T  27487067 aagctgaagaacaatttgaatatgatcatccaatgggtgg 27487106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 138 - 280
Target Start/End: Original strand, 27527139 - 27527281
Alignment:
Q  138 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 237  Q
    ||||| ||||| |||||||| || ||||||||||| |||| |  || |||||||||||| ||| ||||| |||| ||||||||||  |||| ||| || |    
T  27527139 gaagtaccaaagggctatcttgcggtgtatgttggagataaacagaaacggtttgtgatcccaatatcacacttaaaccaaccatcgtttctagagttgc 27527238  T
Q  238 taaatcaagcagaagaagaatttggatatgatcatcctatggg 280  Q
    | | |||||| || ||||| ||||||||||||||||| |||||    
T  27527239 tgagtcaagctgaggaagagtttggatatgatcatcccatggg 27527281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 284
Target Start/End: Complemental strand, 27563444 - 27563362
Alignment:
Q  202 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    ||||||||||||||||| |||| |||||||| || || | |||||| |||||||| ||||||||||||||||| |||||||||    
T  27563444 tatcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatgggtggc 27563362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 283
Target Start/End: Complemental strand, 27444907 - 27444811
Alignment:
Q  187 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtgg 283  Q
    |||||||||| ||| |||||||||||| |||| ||| ||||||||||||| | |||||||| || ||| |||| |||||||| ||||| ||||||||    
T  27444907 ggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtgg 27444811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 283
Target Start/End: Original strand, 27557516 - 27557612
Alignment:
Q  187 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtgg 283  Q
    |||||||||| ||| | |||||||| |||||||||| |||||||||||| || |||||||| || ||| |||||| ||||| |||||| ||||||||    
T  27557516 ggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaacaatttgaatatgttcatccaatgggtgg 27557612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 274
Target Start/End: Complemental strand, 27431261 - 27431174
Alignment:
Q  187 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcc 274  Q
    |||||||||| ||| ||||||||||||||||||| | ||||||||||||  | |||||||| || ||| ||||||||||||| |||||    
T  27431261 ggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatcc 27431174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 144 - 283
Target Start/End: Complemental strand, 27513932 - 27513793
Alignment:
Q  144 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 243  Q
    |||||||| ||||| ||||||||||| || || | |||||  ||||||||||| ||| ||||||||||||||||| | |  || ||||||||  | || |    
T  27513932 ccaaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaacc 27513833  T
Q  244 aagcagaagaagaatttggatatgatcatcctatgggtgg 283  Q
    |||| |||||| ||| || |||||||||||| ||||||||    
T  27513832 aagctgaagaacaatatgaatatgatcatccaatgggtgg 27513793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 27585717 - 27585808
Alignment:
Q  189 tttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatggg 280  Q
    |||||||| ||  |||||||||||||||||||||| |||||||| ||  | | |||||| |||||||| ||||||||||||||||| |||||    
T  27585717 tttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaatggg 27585808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 284
Target Start/End: Original strand, 27425838 - 27425936
Alignment:
Q  186 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    |||| |||||| ||| ||||||||||||||||||||| ||||||||| ||| | | ||||   || ||||| ||||||||||||||||| |||||||||    
T  27425838 cggtatgtgatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggc 27425936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 27595434 - 27595508
Alignment:
Q  209 cttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtgg 283  Q
    |||||||| ||||||||||||||||||||||| |||||||||| |||| |||||||   ||||||| ||||||||    
T  27595434 cttgaaccgaccattatttcaagaattactaagtcaagcagaaaaagagtttggattcaatcatcccatgggtgg 27595508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 283
Target Start/End: Complemental strand, 27526268 - 27526129
Alignment:
Q  144 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 243  Q
    ||||| || ||||| |||||||||||||| || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| ||||||||  | |  |    
T  27526268 ccaaagggatatctagcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagcc 27526169  T
Q  244 aagcagaagaagaatttggatatgatcatcctatgggtgg 283  Q
    |||| || ||| |||||| |||||||||||| | ||||||    
T  27526168 aagctgaggaacaatttgaatatgatcatccaacgggtgg 27526129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 284
Target Start/End: Original strand, 27503964 - 27504046
Alignment:
Q  202 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    ||||||||||||||||||| | ||||||||| ||  | | |||||| || ||||| ||||||||||||||||| |||||||||    
T  27503964 tatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggc 27504046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 284
Target Start/End: Original strand, 27524566 - 27524648
Alignment:
Q  202 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    ||||||| ||||||||||| | ||||||||| ||  | |||||||| || ||||| ||||||||||||||||| |||||||||    
T  27524566 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggc 27524648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 283
Target Start/End: Complemental strand, 27559398 - 27559257
Alignment:
Q  142 tcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaa 241  Q
    |||||||||||||||||||||| |||||||| || | |||||   | ||| |||||||  | ||||  ||||| ||| | | ||||||| | ||| |||     
T  27559398 tcccaaaaggctatctcgcagtttatgttggagacaaaatgaagagatttctgattcctatttcattattgaatcaatcttcatttcaatagttattaag 27559299  T
Q  242 tcaagcagaagaagaatttggatatgatcatcctatgggtgg 283  Q
     ||| |||||||||| ||||||||||||||||| ||||||||    
T  27559298 ccaatcagaagaagagtttggatatgatcatccaatgggtgg 27559257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 27490004 - 27490084
Alignment:
Q  204 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    |||||||| ||| |||||| ||||||||| ||  | |||||||| || ||||| ||||||||||||||||| |||||||||    
T  27490004 tcatacttaaacaaaccatcatttcaagatttgttgaatcaagccgaggaagagtttggatatgatcatccaatgggtggc 27490084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 27501336 - 27501440
Alignment:
Q  179 aatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatg 278  Q
    ||||| |||||||||||| ||| |||||||||| ||||||||||| |||||||| ||  | || ||||| || ||| |||||| ||| |||||||| | |    
T  27501336 aatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaaccaagccgaggaacaatttgaatacgatcatccaacg 27501435  T
Q  279 ggtgg 283  Q
    |||||    
T  27501436 ggtgg 27501440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 284
Target Start/End: Original strand, 27415650 - 27415745
Alignment:
Q  189 tttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    |||||||| ||  |||||||||||||||||||||  |||||||| ||  | | |||||| || ||||| ||||||||||||||| | |||||||||    
T  27415650 tttgtgatccccatatcatacttgaaccaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcattccatgggtggc 27415745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 283
Target Start/End: Original strand, 27476671 - 27476810
Alignment:
Q  144 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 243  Q
    ||||| || ||||| |||||||||||||| || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| |||||| | || |  |    
T  27476671 ccaaagggatatctagcagtgtatgttggtgagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaactgctgagcc 27476770  T
Q  244 aagcagaagaagaatttggatatgatcatcctatgggtgg 283  Q
    ||   || ||| |||||| |||||||||||| ||||||||    
T  27476771 aaagtgaggaacaatttgaatatgatcatccaatgggtgg 27476810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 283
Target Start/End: Original strand, 27479885 - 27480024
Alignment:
Q  144 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 243  Q
    |||||||||||||| ||||| || || || || | |||||  || |||||||||||  ||||||||||||||||| ||| ||| ||| | ||  | || |    
T  27479885 ccaaaaggctatctagcagtatacgtaggagagaaaatgaagcgttttgtgattcctgtatcatacttgaaccaaacatcattccaaaagttgttgaacc 27479984  T
Q  244 aagcagaagaagaatttggatatgatcatcctatgggtgg 283  Q
    |||| || ||| |||||| |||||||||||| ||||||||    
T  27479985 aagctgaggaacaatttgaatatgatcatccaatgggtgg 27480024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 283
Target Start/End: Complemental strand, 27505858 - 27505719
Alignment:
Q  144 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 243  Q
    ||||| || ||||| |||||||| || || || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| ||||||||  | || |    
T  27505858 ccaaaggggtatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgaacc 27505759  T
Q  244 aagcagaagaagaatttggatatgatcatcctatgggtgg 283  Q
    |||| || ||| |||||| |||||| ||||| ||||||||    
T  27505758 aagctgaggaacaatttgaatatgaccatccaatgggtgg 27505719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 284
Target Start/End: Complemental strand, 27468425 - 27468343
Alignment:
Q  202 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    |||||||||| |||||||| | ||||||||| ||  | | |||| | || ||||||||||||||||||||||| |||||||||    
T  27468425 tatcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggc 27468343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 284
Target Start/End: Complemental strand, 27475677 - 27475595
Alignment:
Q  202 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    ||||||||||||| ||||| | ||||||||| ||  | | |||||| || ||||| ||||||||||||||||| |||||||||    
T  27475677 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcccatgggtggc 27475595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 284
Target Start/End: Original strand, 27514933 - 27515015
Alignment:
Q  202 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    ||||||||||||| ||||| | ||||||||| ||  | | |||| | || ||||||||||||||||||||||| |||||||||    
T  27514933 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggc 27515015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 273
Target Start/End: Original strand, 27446124 - 27446260
Alignment:
Q  137 tgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaatta 236  Q
    ||||||||||||||||||||| || || |||||||| || | |||||  || ||||||||||||   ||||  ||||| ||||| | ||||||||| |      
T  27446124 tgaagtcccaaaaggctatcttgcggtttatgttggagaaaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcatttcaagagtcg 27446223  T
Q  237 ctaaatcaagcagaagaagaatttggatatgatcatc 273  Q
     |||  ||| |||||||||| |||| |||||||||||    
T  27446224 ttaagccaatcagaagaagagtttgaatatgatcatc 27446260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 274
Target Start/End: Complemental strand, 27497484 - 27497348
Alignment:
Q  138 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 237  Q
    ||||| ||||| |||||| | |||||||||||||| |||| |   |  ||||||||||| ||  | |||||||| ||||||||||| |||||| | ||      
T  27497484 gaagttccaaagggctatgttgcagtgtatgttggagataaacaaaagcggtttgtgatccctatctcatacttaaaccaaccattgtttcaatatttgt 27497385  T
Q  238 taaatcaagcagaagaagaatttggatatgatcatcc 274  Q
    | | |||||| || ||||| |||||||||||||||||    
T  27497384 tgagtcaagctgaggaagagtttggatatgatcatcc 27497348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 283
Target Start/End: Original strand, 27498399 - 27498538
Alignment:
Q  144 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 243  Q
    ||||| || ||||| ||||| |||||||| ||   ||||| ||| |||||||| ||  |||||||||||||||||||||  || ||||| ||  | || |    
T  27498399 ccaaagggatatctagcagtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcgttccaagacttgttgaacc 27498498  T
Q  244 aagcagaagaagaatttggatatgatcatcctatgggtgg 283  Q
    |||| || ||| |||| | |||||||||||| ||||||||    
T  27498499 aagccgaggaacaattcgaatatgatcatccaatgggtgg 27498538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 27554364 - 27554423
Alignment:
Q  215 ccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcc 274  Q
    ||||||||  ||||||||||| || |||||||| || ||| |||||||||||||||||||    
T  27554364 ccaaccatcgtttcaagaattgctgaatcaagctgaggaacaatttggatatgatcatcc 27554423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 284
Target Start/End: Original strand, 27420450 - 27420532
Alignment:
Q  202 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    |||||||||||| |||||| | ||||||||  || || | |||||  || ||||| ||||||||||||||||| |||||||||    
T  27420450 tatcatacttgagccaaccttcatttcaaggcttgctgagtcaagttgaggaagagtttggatatgatcatcccatgggtggc 27420532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 284
Target Start/End: Original strand, 27423264 - 27423346
Alignment:
Q  202 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    ||||||||||||||||||| | ||||||||||||  | | |||||| || ||||| ||||| ||  ||||||| |||||||||    
T  27423264 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggc 27423346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 284
Target Start/End: Complemental strand, 27570147 - 27570065
Alignment:
Q  202 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    |||||||||| | |||||| | ||||||||| || || | |||||| || ||||| || |||||||||||||| |||||||||    
T  27570147 tatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 27570065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 283
Target Start/End: Complemental strand, 27502921 - 27502824
Alignment:
Q  186 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtgg 283  Q
    ||||||||||||||| | ||||| ||||| ||| | | ||||||||| || || |  ||||| |  ||||||||||||||||| ||||| ||||||||    
T  27502921 cggtttgtgattccaatgtcatatttgaatcaaacttcatttcaagacttgctgagccaagctgtggaagaatttggatatgaccatccaatgggtgg 27502824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 27508896 - 27508976
Alignment:
Q  204 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    ||||| ||||||||||| | ||||||||| ||  | ||||| || || ||||| ||||||||||||||||| | |||||||    
T  27508896 tcatatttgaaccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggtggc 27508976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 144 - 284
Target Start/End: Complemental strand, 1756913 - 1756773
Alignment:
Q  144 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 243  Q
    ||||| |||||||| |||||| ||||||| || | |  ||  ||||||||||| ||| |||||||||||||||||||||  |||||| | ||  | | ||    
T  1756913 ccaaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtc 1756814  T
Q  244 aagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    |||| ||||||||||||||||||||||| || |||||||||    
T  1756813 aagctgaagaagaatttggatatgatcaccccatgggtggc 1756773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 274
Target Start/End: Complemental strand, 1756166 - 1756021
Alignment:
Q  129 aagggacttgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttc 228  Q
    |||||| ||||||||   |||||||| || ||||| |||||||  ||| ||||||  | | | |||||| || ||||||||||||| ||||| | |||||    
T  1756166 aagggatttgaagtctagaaaggctaccttgcagtctatgttgaagatcgaatgaagcagatagtgatttcaatatcatacttgaatcaaccttaatttc 1756067  T
Q  229 aagaattactaaatcaagcagaagaagaatttggatatgatcatcc 274  Q
    |||||||||||   |||||||||||  ||||  |||||||||||||    
T  1756066 aagaattactatgccaagcagaagagcaattcagatatgatcatcc 1756021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 283
Target Start/End: Complemental strand, 1754397 - 1754258
Alignment:
Q  144 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 243  Q
    |||||||| ||||| || || |||||||| ||   |||||  ||||||||||| ||  ||||||||||||||||| | | ||||||| |||| |||||      
T  1754397 ccaaaaggatatctagctgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaaca 1754298  T
Q  244 aagcagaagaagaatttggatatgatcatcctatgggtgg 283  Q
    || | || ||| | |||| |||||||||||| ||||||||    
T  1754297 aatctgaggaacagtttgaatatgatcatccgatgggtgg 1754258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 38032260 - 38032357
Alignment:
Q  138 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaatt 235  Q
    ||||| |||||||||||||| |||||||||||||| || | ||||||| ||||| |||||||| |||||| ||||||  | || ||||||||||||||    
T  38032260 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatgagaaggtttatgattccagtatcattcttgaatgagcctttatttcaagaatt 38032357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 280
Target Start/End: Original strand, 38038525 - 38038667
Alignment:
Q  138 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 237  Q
    ||||||||||||||| |||| |||||||||||||| || | ||||||| ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  38038525 gaagtcccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 38038624  T
Q  238 taaatcaagcagaagaagaatttggatatgatcatcctatggg 280  Q
    | |  ||||| ||||| ||||| || |||  |||||| |||||    
T  38038625 ttagccaagctgaagaggaattcggttattgtcatccaatggg 38038667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 138 - 283
Target Start/End: Original strand, 50913474 - 50913619
Alignment:
Q  138 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 237  Q
    |||||||||||||||||||| |||||||||||||| || | |||||   ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  50913474 gaagtcccaaaaggctatcttgcagtgtatgttggagagaaaatgaagaggttcttgattccaatatcattcttgaatgagcctttatttcaagaattgc 50913573  T
Q  238 taaatcaagcagaagaagaatttggatatgatcatcctatgggtgg 283  Q
    | |  ||||| ||||| |||||||| ||   |||||| ||||||||    
T  50913574 ttagccaagctgaagaggaatttggctactgtcatccaatgggtgg 50913619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 284
Target Start/End: Original strand, 55084770 - 55084910
Alignment:
Q  144 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 243  Q
    |||||||| | ||| |||||||||||||| || | |||||  ||||||||||| ||  | || |||||||||||||||| ||||||||| ||  | | ||    
T  55084770 ccaaaagggtgtcttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtc 55084869  T
Q  244 aagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
      || || |||||||||||||| |||||||| |||||||||    
T  55084870 gggcggaggaagaatttggatacgatcatccaatgggtggc 55084910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 38027433 - 38027530
Alignment:
Q  138 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaatt 235  Q
    ||||| ||||||||| |||| |||||||||||||| || | ||||||| ||||| |||||||  |||||| ||||||  | || ||||||||||||||    
T  38027433 gaagttccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggtttatgattcccgtatcattcttgaatgagcctttatttcaagaatt 38027530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 283
Target Start/End: Original strand, 38035033 - 38035178
Alignment:
Q  138 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 237  Q
    ||||||||||||||| |||| || ||||||||||| || | |||| || ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  38035033 gaagtcccaaaaggccatcttgcggtgtatgttggagagaaaatgcgaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 38035132  T
Q  238 taaatcaagcagaagaagaatttggatatgatcatcctatgggtgg 283  Q
    | |  ||||| ||||| ||||| || |||  |||||| ||||||||    
T  38035133 ttagccaagctgaagaggaattcggttattgtcatccaatgggtgg 38035178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 284
Target Start/End: Complemental strand, 38025031 - 38024891
Alignment:
Q  144 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 243  Q
    ||||| |||||||| ||||| |||||||| ||   |||||  |||||||| || ||  | ||||||||||||||| | |  |||||| | ||| | | ||    
T  38025031 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtc 38024932  T
Q  244 aagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    ||||||| |||||||||||||||||||| || |||||||||    
T  38024931 aagcagaggaagaatttggatatgatcacccaatgggtggc 38024891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 284
Target Start/End: Complemental strand, 38031483 - 38031343
Alignment:
Q  144 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 243  Q
    ||||| |||||||| ||||| |||||||| ||   |||||  |||||||| || ||  | ||||||||||||||| | |  |||||| | ||| | | ||    
T  38031483 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtc 38031384  T
Q  244 aagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    ||||||| |||||||||||||||||||| || |||||||||    
T  38031383 aagcagaggaagaatttggatatgatcacccaatgggtggc 38031343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 284
Target Start/End: Complemental strand, 50912025 - 50911885
Alignment:
Q  144 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 243  Q
    ||||| |||||||| || || |||||||| || |  |||| |||||||||||| ||    ||||||||||||||| | | ||||||| | ||  | | ||    
T  50912025 ccaaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaaaacttgttgagtc 50911926  T
Q  244 aagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    ||||||| |||||||||||||||||||| || |||||||||    
T  50911925 aagcagaggaagaatttggatatgatcacccaatgggtggc 50911885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 280
Target Start/End: Original strand, 38043929 - 38044023
Alignment:
Q  186 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatggg 280  Q
    ||||||||||| ||  | ||||||||||| ||| | |  |||||||| || || | ||||||||| ||||||||||||||||||||||| |||||    
T  38043929 cggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatggg 38044023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 50910004 - 50910084
Alignment:
Q  204 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    ||||||||||||||| | | ||||||| | ||  | |||||||  || ||||||||||||||||||||||| |||||||||    
T  50910004 tcatacttgaaccaagcttcatttcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatgggtggc 50910084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 280
Target Start/End: Original strand, 21608235 - 21608377
Alignment:
Q  138 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 237  Q
    ||||| |||||||||||||| |||||||||||||| || | ||||||| ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  21608235 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 21608334  T
Q  238 taaatcaagcagaagaagaatttggatatgatcatcctatggg 280  Q
    | |  ||||| ||||| ||||| || |||  |||||| |||||    
T  21608335 ttagccaagctgaagaggaattcggttattgtcatccaatggg 21608377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 21607354 - 21607312
Alignment:
Q  242 tcaagcagaagaagaatttggatatgatcatcctatgggtggc 284  Q
    ||||||||| |||||||||||||||||||| || |||||||||    
T  21607354 tcaagcagaggaagaatttggatatgatcacccaatgggtggc 21607312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 21634608 - 21634656
Alignment:
Q  225 tttcaagaattactaaatcaagcagaagaagaatttggatatgatcatc 273  Q
    |||||||| || || | ||||||||| ||||||||||||||||||||||    
T  21634608 tttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatc 21634656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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