View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20836_high_11 (Length: 327)
Name: NF20836_high_11
Description: NF20836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20836_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 83 - 307
Target Start/End: Complemental strand, 13473882 - 13473660
Alignment:
| Q |
83 |
tccttctatggctccaacatttgagaaggtgagtagtagctatacacccgacgatattgcactctgtattctttctaaacttcctgtcaaatctgttaag |
182 |
Q |
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| T |
13473882 |
tccttctatggctccaacatttgagaaggtgagtagtagctatatacccgatgatattgtact--gtattctctctaaacttcctgtcaaatctgttaag |
13473785 |
T |
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| Q |
183 |
cggtttacatgcgttcgcaaaccatggtcacttttgtttggcaatcctactttcctaaccatgttccgcaacaatttggtttccaaatcccattcattgt |
282 |
Q |
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| T |
13473784 |
cggtttacatgcgttcgtaaaccatggtcacttttgtttggcaatcctactttcctaaccatgttccgcaacaatttggtttccaaatcccattcattgt |
13473685 |
T |
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| Q |
283 |
atgatgacgacgacgatgatgatgt |
307 |
Q |
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| T |
13473684 |
atgatgacgacgacgacgatgatgt |
13473660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 13473925 - 13473889
Alignment:
| Q |
52 |
cagaacctgtgcttacatgatttagttgtactccttc |
88 |
Q |
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| T |
13473925 |
cagaacgtgtggttacatgatttagttgtactccttc |
13473889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 9763456 - 9763572
Alignment:
| Q |
106 |
agaaggtgagtagtagctatacacccgacgatattgcactctgtattctttctaaacttcctgtcaaatctgttaagcggtttacatgcgttcgcaaacc |
205 |
Q |
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| T |
9763456 |
agaaggttagtagtagctatataccagatgacattgctttctgtattctctctaaacttcctgttaaatctgttaagcatttttcttgtgttcgcaaatc |
9763555 |
T |
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| Q |
206 |
atggtcacttttgtttg |
222 |
Q |
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| T |
9763556 |
atggtctcttttgtttg |
9763572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 297
Target Start/End: Original strand, 13280227 - 13280430
Alignment:
| Q |
94 |
ctccaacatttgagaaggtgagtagtagctatacacccgacgatattgcactctgtattctttctaaacttcctgtcaaatctgttaagcggtttacatg |
193 |
Q |
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| T |
13280227 |
ctccaacgtttgagaaggttagtggtacttatatacccgatgatattgttttctctattctctctaaactccctattaaacatcttaaacgctttgcttg |
13280326 |
T |
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| Q |
194 |
cgttcgcaaaccatggtcacttttgtttggcaatcctactttcctaaccatgttccgcaacaatttggtttccaaatcccattcattgtatgatgacgac |
293 |
Q |
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||||||||| ||||||| | ||| |||| || |||| |||| | | |||||||||||||||| | ||||||||||| || || ||||||||| ||| |
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| T |
13280327 |
tgttcgcaaatcatggtctcatttatttgaaaaccctattttcatgaacatgttccgcaacaatcttgtttccaaatctcaaacagggtatgatgatgac |
13280426 |
T |
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| Q |
294 |
gacg |
297 |
Q |
| |
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|||| |
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| T |
13280427 |
gacg |
13280430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 40399874 - 40399838
Alignment:
| Q |
81 |
actccttctatggctccaacatttgagaaggtgagta |
117 |
Q |
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|||||||| |||||||||||||||||||||||||||| |
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| T |
40399874 |
actccttccatggctccaacatttgagaaggtgagta |
40399838 |
T |
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