View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20836_high_13 (Length: 320)
Name: NF20836_high_13
Description: NF20836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20836_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 6 - 284
Target Start/End: Original strand, 17390443 - 17390721
Alignment:
| Q |
6 |
agaagcaaagggatgaaattgagatgaaaatcaaaagggactactagtgcaagtttacaaaatttatgtgaagaacaacaatgataaagaaggagattgt |
105 |
Q |
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| T |
17390443 |
agaatcaaaaggatgaaattgagatgaaaatcaaaagggaatactagtgcaagtttacaaaagttatgtgaagaacaacaatgataaaaaaggagattgt |
17390542 |
T |
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| Q |
106 |
gagattcacactatcattcgtgattcaaacactaaggaaacttataagaatgctaagtttggatctagcattgaataatctgttaacgacccttattttc |
205 |
Q |
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| T |
17390543 |
gagattcacactatcattcgtgattcaaatactgaggaaacttataagaatgctaagtttggatctagcaatgaataatctgttaacgacccttattttc |
17390642 |
T |
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| Q |
206 |
ttattgcaagagacgtcttattgaacatgtaatttcactcatatacctaatccaaatgtgatgatacaaatcttttata |
284 |
Q |
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| T |
17390643 |
ttattgcaagagacgtcttattgaacatgtaatttcactcatatacctaatccaaatgtgatgatacaaatcttttata |
17390721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 13706412 - 13706678
Alignment:
| Q |
17 |
gatgaaattgagatgaaaatcaaaagggactactagtgcaagtttacaaaatttatgtgaagaacaacaatgataaagaaggagattgtgagattcacac |
116 |
Q |
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| T |
13706412 |
gatgaaattgagatgaaaatcaaaagggactactagtgcaagtttacaaaagggatgtgaagaacaacaatgatgaagaacgagattgtgagattcacac |
13706511 |
T |
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| Q |
117 |
tatcattcgtgattcaaacactaaggaaacttataagaatgctaagtttggatctagcattgaataatctgttaacgacccttattttcttattgcaaga |
216 |
Q |
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| T |
13706512 |
taacatctgtgattcaaacagtgaggaaacttataagaatgctaagtttggatctagcaatgaataatctgttaacgacccttattttcttgttgcaaga |
13706611 |
T |
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| Q |
217 |
gacgtcttattgaacatgtaatttcactcatatacctaatccaaatgtgatgatacaaatcttttata |
284 |
Q |
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| T |
13706612 |
gacgtcttattgaacatgtaatttcactcatatacctaatccaaatgagat-atacaaatcttttata |
13706678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 13713903 - 13714169
Alignment:
| Q |
17 |
gatgaaattgagatgaaaatcaaaagggactactagtgcaagtttacaaaatttatgtgaagaacaacaatgataaagaaggagattgtgagattcacac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
13713903 |
gatgaaattgagatgaaaatcaaaagggactactagtgcaagtttacaaaagggatgtgaagaacaacaatgatgaagaacgagattgtgagattcacac |
13714002 |
T |
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| Q |
117 |
tatcattcgtgattcaaacactaaggaaacttataagaatgctaagtttggatctagcattgaataatctgttaacgacccttattttcttattgcaaga |
216 |
Q |
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| T |
13714003 |
taacatctgtgattcaaacagtgaggaaacttataagaatgctaagtttggatctagcaatgaataatctgttaacgacccttattttcttgttgcaaga |
13714102 |
T |
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| Q |
217 |
gacgtcttattgaacatgtaatttcactcatatacctaatccaaatgtgatgatacaaatcttttata |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
13714103 |
gacgtcttattgaacatgtaatttcactcatatacctaatccaaatgagat-atacaaatcttttata |
13714169 |
T |
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