View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20836_high_18 (Length: 314)

Name: NF20836_high_18
Description: NF20836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20836_high_18
NF20836_high_18
[»] chr5 (9 HSPs)
chr5 (1-314)||(37704733-37705046)
chr5 (212-307)||(34599459-34599555)
chr5 (1-86)||(37699258-37699349)
chr5 (206-310)||(2143289-2143394)
chr5 (206-309)||(26325678-26325781)
chr5 (209-257)||(38458771-38458819)
chr5 (144-186)||(30384256-30384298)
chr5 (227-287)||(29531914-29531975)
chr5 (145-181)||(1630012-1630048)
[»] chr4 (7 HSPs)
chr4 (206-310)||(22519386-22519491)
chr4 (206-309)||(31095124-31095228)
chr4 (206-307)||(49291234-49291335)
chr4 (3-86)||(16840857-16840946)
chr4 (146-186)||(31095092-31095132)
chr4 (206-271)||(51580077-51580140)
chr4 (221-263)||(53769786-53769828)
[»] chr2 (6 HSPs)
chr2 (221-314)||(4558769-4558863)
chr2 (225-310)||(8198509-8198593)
chr2 (225-310)||(8203269-8203353)
chr2 (221-302)||(6739472-6739554)
chr2 (206-266)||(42054042-42054102)
chr2 (234-287)||(4923553-4923607)
[»] chr1 (6 HSPs)
chr1 (221-314)||(47726457-47726551)
chr1 (221-314)||(47747763-47747857)
chr1 (222-307)||(29954915-29955000)
chr1 (221-307)||(363766-363853)
chr1 (221-287)||(26706207-26706274)
chr1 (221-267)||(18470384-18470430)
[»] chr6 (12 HSPs)
chr6 (221-314)||(16419743-16419837)
chr6 (146-188)||(17411089-17411131)
chr6 (222-314)||(196146-196238)
chr6 (206-310)||(17411121-17411226)
chr6 (224-308)||(28477424-28477509)
chr6 (224-308)||(29789876-29789961)
chr6 (227-310)||(33547849-33547933)
chr6 (229-302)||(10544136-10544210)
chr6 (240-300)||(32548174-32548235)
chr6 (249-308)||(7202359-7202419)
chr6 (145-188)||(196244-196287)
chr6 (248-308)||(29693322-29693383)
[»] chr3 (5 HSPs)
chr3 (218-302)||(30534581-30534666)
chr3 (145-188)||(44291420-44291463)
chr3 (221-287)||(50898882-50898948)
chr3 (221-267)||(51265744-51265790)
chr3 (269-310)||(44291141-44291182)
[»] chr7 (9 HSPs)
chr7 (221-307)||(48447315-48447402)
chr7 (221-310)||(12264801-12264890)
chr7 (221-300)||(12422262-12422342)
chr7 (221-272)||(28002279-28002330)
chr7 (206-287)||(41331168-41331249)
chr7 (227-267)||(32857850-32857890)
chr7 (145-183)||(12422352-12422390)
chr7 (206-254)||(28002235-28002283)
chr7 (156-188)||(32857805-32857837)
[»] chr8 (4 HSPs)
chr8 (146-191)||(18080600-18080645)
chr8 (206-314)||(2510154-2510263)
chr8 (206-307)||(3806871-3806972)
chr8 (207-271)||(8453098-8453163)


Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 37704733 - 37705046
Alignment:
Q  1 aaatacacctgaaatgaagaaaataacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacgatactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37704733 aaatacacctgaaatgaagaaaataacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacgagactt 37704832  T
Q  101 ttaagttatttaattataacaaatcggnnnnnnnnnnnnnnnncgtatcacttacgtcatttaagttatttaattataacaagttagttatgtagttgct 200  Q
    |||||||||||||||||||||||||||                |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37704833 ttaagttatttaattataacaaatcggttttttaagattttttcgtatcacttgcgtcatttaagttatttaattataacaagttagttatgtagttgct 37704932  T
Q  201 caaaaaacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagat 300  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704933 caaaaaacaagttagttatgtaagtatttttcgtaacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagat 37705032  T
Q  301 ctgaaatccctcaa 314  Q
    ||||||||||||||    
T  37705033 ctgaaatccctcaa 37705046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 34599459 - 34599555
Alignment:
Q  212 ttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaat 307  Q
    |||||||| |||||||||||| |||  |||| ||| |||||||| |||||||||||| ||||||||| ||||||||| || ||||||||||| ||||    
T  34599459 ttagttatttaagtatttttcttaatgcttaagtcctttaagttgtttaattgtaacttttaggtccagaataacttacatttttaagatctaaaat 34599555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 37699258 - 37699349
Alignment:
Q  1 aaatacacctgaaatgaagaaaataa------cattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc 86  Q
    |||||||||| |||||||||||||||      |||||||||||||||| | ||||||||||||||||||||| || ||| ||||||||||||    
T  37699258 aaatacacctaaaatgaagaaaataataacaacattaattgtatttagcaacggagacttagacttcttcaactgaacagactttaaagagc 37699349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 310
Target Start/End: Complemental strand, 2143394 - 2143289
Alignment:
Q  206 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctga 304  Q
    |||||||||||  | | |||||||||| ||||| ||||||  ||||||||||||||||| |||||| ||| |||||||||||| ||  |||||||| | |    
T  2143394 aacaagttagtcctttcagtatttttcgtaacatttaggttttttaagttatttaattgaaactttgaggccccgaataacttacatgtttaagatataa 2143295  T
Q  305 aatccc 310  Q
    ||||||    
T  2143294 aatccc 2143289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 26325678 - 26325781
Alignment:
Q  206 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaa 305  Q
    ||||||||||| || ||||||||| |  |||||||||  || ||||| |||||||||| ||||||||| ||| |||||||||  | |||||| || ||||    
T  26325678 aacaagttagtcatttaagtatttattgtaacacttaaatcctttaaattatttaattataactttagatcctgaataacttatatttttaatatttgaa 26325777  T
Q  306 atcc 309  Q
    ||||    
T  26325778 atcc 26325781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 38458819 - 38458771
Alignment:
Q  209 aagttagttatgtaagtatttttcataacacttaggtcgtttaagttat 257  Q
    |||||||| || ||||||||||||||||||||| |||| ||||||||||    
T  38458819 aagttagtcatttaagtatttttcataacacttgggtcctttaagttat 38458771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 30384256 - 30384298
Alignment:
Q  144 cgtatcacttacgtcatttaagttatttaattataacaagtta 186  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||    
T  30384256 cgtattacttacgtcttttaagttatttaattgtaacaagtta 30384298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 29531914 - 29531975
Alignment:
Q  227 tttttcataacacttaggtcgtttaagttatttaattgtaa-ctttaggtcccgaataactt 287  Q
    |||||| || || ||| ||| ||||||||||||||||||||  |||||||||||||||||||    
T  29531914 tttttcgtatcatttacgtcatttaagttatttaattgtaatttttaggtcccgaataactt 29531975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 1630048 - 1630012
Alignment:
Q  145 gtatcacttacgtcatttaagttatttaattataaca 181  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  1630048 gtatcacttacgtcttttaagttatttaatcataaca 1630012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 206 - 310
Target Start/End: Original strand, 22519386 - 22519491
Alignment:
Q  206 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctga 304  Q
    |||||||||||  | |||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| || |||||||||||||    
T  22519386 aacaagttagtcctttaagtatttttcgtaacacttaggtcctttaagttatttaattgtaacttttaggtcccaaataacttacatttttaagatctga 22519485  T
Q  305 aatccc 310  Q
    ||||||    
T  22519486 aatccc 22519491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 31095124 - 31095228
Alignment:
Q  206 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctga 304  Q
    ||||||||| | || |||||||| ||  ||||||||||||  ||||||||||||||||||||| ||||||||  ||||||||| || |||||||||||||    
T  31095124 aacaagttaatcatttaagtattgtttgtaacacttaggttctttaagttatttaattgtaacttttaggtcttgaataacttacatttttaagatctga 31095223  T
Q  305 aatcc 309  Q
    |||||    
T  31095224 aatcc 31095228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 49291335 - 49291234
Alignment:
Q  206 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaa 305  Q
    ||||||||||| || ||||||||||| |||||| ||| ||| ||||||||||||||||||||||||    ||||| |||||| || ||| ||||||||||    
T  49291335 aacaagttagtcatttaagtattttttataacatttaagtcttttaagttatttaattgtaacttttaaacccgagtaacttacattttgaagatctgaa 49291236  T
Q  306 at 307  Q
    ||    
T  49291235 at 49291234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 16840946 - 16840857
Alignment:
Q  3 atacacctgaaatgaagaaaataa------cattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc 86  Q
    ||||||||||||||||||||||||      |||||| ||||||||||| |||||||||||||||| |||| | | |||||||||||||||    
T  16840946 atacacctgaaatgaagaaaataataacaacattaaatgtatttagaagcggagacttagacttcgtcaactatccatactttaaagagc 16840857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 31095092 - 31095132
Alignment:
Q  146 tatcacttacgtcatttaagttatttaattataacaagtta 186  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  31095092 tatcacttacgtcctttaagttatttaattataacaagtta 31095132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 51580140 - 51580077
Alignment:
Q  206 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt 271  Q
    |||||||||||| | |||||||||||| ||||| ||||||| |||| |||||||||||||||||||    
T  51580140 aacaagttagttct-taagtatttttcgtaacatttaggtc-tttacgttatttaattgtaacttt 51580077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 53769828 - 53769786
Alignment:
Q  221 taagtatttttcataacacttaggtcgtttaagttatttaatt 263  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||    
T  53769828 taagtatttttcataccacttaggtcttttaaattatttaatt 53769786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 314
Target Start/End: Original strand, 4558769 - 4558863
Alignment:
Q  221 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaa 314  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||| |  |||||||||||| ||||||||||| |||| ||||||    
T  4558769 taagtatttttcgtaacacttaggtcttttaatttatttaattgtaacttttaggccatgaataacttgcatttttaagatctaaaatacctcaa 4558863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 8198509 - 8198593
Alignment:
Q  225 tatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccc 310  Q
    |||||||| ||||||||||||  ||||||||||||||||| |||||| |||  || | |||||| || |||||||||||||||||||    
T  8198509 tatttttcttaacacttaggt--tttaagttatttaattgaaacttttaggctccaactaacttacatttttaagatctgaaatccc 8198593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 8203269 - 8203353
Alignment:
Q  225 tatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccc 310  Q
    |||||||| ||||||||||||  ||||||||||||||||| |||||| |||  || | |||||| || |||||||||||||||||||    
T  8203269 tatttttcttaacacttaggt--tttaagttatttaattgaaacttttaggctccaactaacttacatttttaagatctgaaatccc 8203353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 302
Target Start/End: Original strand, 6739472 - 6739554
Alignment:
Q  221 taagtatttttcataacacttaggtcgtttaagttatttaattgt-aactttaggtcccgaataacttgcagttttaagatct 302  Q
    |||||||||||  ||||| ||||||| |||||||||||||||||| ||||||| | | | |||||||| || |||||||||||    
T  6739472 taagtattttttgtaacatttaggtcatttaagttatttaattgtaaactttaagcctctaataacttacatttttaagatct 6739554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 42054042 - 42054102
Alignment:
Q  206 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgta 266  Q
    |||||||||||  | |||||||||||| || |||||||||  |||||||||||||||||||    
T  42054042 aacaagttagtcctttaagtatttttcctatcacttaggttctttaagttatttaattgta 42054102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 4923553 - 4923607
Alignment:
Q  234 taacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataactt 287  Q
    ||||||||||||  ||||||||||||||||| ||| ||||||| |||||||||||    
T  4923553 taacacttaggtactttaagttatttaattgcaacttttaggttccgaataactt 4923607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 314
Target Start/End: Original strand, 47726457 - 47726551
Alignment:
Q  221 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaa 314  Q
    |||||||| ||  ||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||||| ||||||    
T  47726457 taagtattgtttgtaacacttaggtgctttaagttatttaattgtaacttttagatcccgaataacttgcatttttaagatatgaaattcctcaa 47726551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 314
Target Start/End: Original strand, 47747763 - 47747857
Alignment:
Q  221 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaa 314  Q
    |||||||| ||  ||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||||| ||||||    
T  47747763 taagtattgtttgtaacacttaggtgctttaagttatttaattgtaacttttagatcccgaataacttgcatttttaagatatgaaattcctcaa 47747857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 29955000 - 29954915
Alignment:
Q  222 aagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtccc-gaataacttgcagttttaagatctgaaat 307  Q
    ||||||||| | || |||||||||| ||||||||||||||||||||||||  ||||| ||||||||| || ||||||||| ||||||    
T  29955000 aagtattttccgtaccacttaggtc-tttaagttatttaattgtaacttttagtcccagaataacttacatttttaagatatgaaat 29954915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 363853 - 363766
Alignment:
Q  221 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaat 307  Q
    |||||||||||| |||  |||| ||| |||||||| |||||||||||| |||||| || ||||||||| || ||||||||||| ||||    
T  363853 taagtatttttcgtaatgcttaagtcatttaagttgtttaattgtaacttttaggcccagaataacttacatttttaagatctaaaat 363766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 26706207 - 26706274
Alignment:
Q  221 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataactt 287  Q
    |||||| ||||| ||||||||||||  ||||||||||||||||||||| |||||| | ||||||||||    
T  26706207 taagtagttttcgtaacacttaggttctttaagttatttaattgtaacttttaggcctcgaataactt 26706274  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 18470430 - 18470384
Alignment:
Q  221 taagtatttttcataacacttaggtcgtttaagttatttaattgtaa 267  Q
    |||||||||||||||  |||||| || ||||||||||||||||||||    
T  18470430 taagtatttttcatacaacttagatcctttaagttatttaattgtaa 18470384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 221 - 314
Target Start/End: Complemental strand, 16419837 - 16419743
Alignment:
Q  221 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaa 314  Q
    ||||||||| || ||||||||||||| ||||||||||||||||| ||| |||||| ||| |||||||| || || |||||||| |||||||||||    
T  16419837 taagtatttgtcgtaacacttaggtcttttaagttatttaattgaaacttttaggccccaaataacttacatttctaagatctaaaatccctcaa 16419743  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 17411089 - 17411131
Alignment:
Q  146 tatcacttacgtcatttaagttatttaattataacaagttagt 188  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  17411089 tatcacttacgtcatttaagttatttaattgtaacaagttagt 17411131  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 314
Target Start/End: Complemental strand, 196238 - 196146
Alignment:
Q  222 aagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaa 314  Q
    |||||| ||||  |||||||||||| ||||||||||||||||||||| |||| | || ||||||||| || ||||||||| |||||| ||||||    
T  196238 aagtatatttcgaaacacttaggtc-tttaagttatttaattgtaacttttaagccctgaataacttacatttttaagatatgaaatacctcaa 196146  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 310
Target Start/End: Original strand, 17411121 - 17411226
Alignment:
Q  206 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtc-ccgaataacttgcagttttaagatctga 304  Q
    |||||||||||  | ||| |||||||| ||| || || ||| ||| ||||||||||||||||| ||  ||| ||||||||||| || |||||||||||||    
T  17411121 aacaagttagtcttttaaatatttttcgtaatacataagtcttttgagttatttaattgtaacgtttagtctccgaataacttacatttttaagatctga 17411220  T
Q  305 aatccc 310  Q
    ||||||    
T  17411221 aatccc 17411226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 28477509 - 28477424
Alignment:
Q  224 gtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatc 308  Q
    ||||||||||||||| ||||||  ||||| ||||||||| |||| ||| ||| |||||||||||| || ||||||||||| |||||    
T  28477509 gtatttttcataacagttaggttctttaaattatttaatcgtaatttttaggccccgaataacttacatttttaagatctaaaatc 28477424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 29789961 - 29789876
Alignment:
Q  224 gtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatc 308  Q
    ||||||||||||||| ||||||  ||||| ||||||||| |||| ||| ||| |||||||||||| || ||||||||||| |||||    
T  29789961 gtatttttcataacagttaggttctttaaattatttaatcgtaatttttaggccccgaataacttacaattttaagatctaaaatc 29789876  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 33547849 - 33547933
Alignment:
Q  227 tttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccc 310  Q
    ||||||||| || ||||||| ||||||||||||||||||||| |||| ||  ||||||||||  | ||||||| |||||||||||    
T  33547849 tttttcataccatttaggtcctttaagttatttaattgtaacttttaagtttcgaataacttaaatttttaaggtctgaaatccc 33547933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 302
Target Start/End: Original strand, 10544136 - 10544210
Alignment:
Q  229 tttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatct 302  Q
    |||| ||||||||||||| ||||||||| ||||||||||| ||||||||  |||||| || || |||||||||||    
T  10544136 tttcgtaacacttaggtcatttaagttagttaattgtaacttttaggtcttgaataatttacatttttaagatct 10544210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 32548235 - 32548174
Alignment:
Q  240 ttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagat 300  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||||| ||| || |||||||||    
T  32548235 ttaggtcctttaagttatttaattgtaacttttagatcccgaatagcttacatttttaagat 32548174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 7202419 - 7202359
Alignment:
Q  249 ttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatc 308  Q
    |||||||||||||||||||| |||||| ||||||||||||  | ||||||||||| |||||    
T  7202419 ttaagttatttaattgtaacttttaggccccgaataacttaaatttttaagatctaaaatc 7202359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 196287 - 196244
Alignment:
Q  145 gtatcacttacgtcatttaagttatttaattataacaagttagt 188  Q
    ||||||||||||||||||||||||||||||| ||| || |||||    
T  196287 gtatcacttacgtcatttaagttatttaattgtaataatttagt 196244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 29693383 - 29693322
Alignment:
Q  248 tttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatc 308  Q
    ||||| ||||||||| |||||||| ||| |||||||||||| || ||||||||||| |||||    
T  29693383 tttaaattatttaatcgtaacttttaggacccgaataacttacatttttaagatctaaaatc 29693322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 302
Target Start/End: Complemental strand, 30534666 - 30534581
Alignment:
Q  218 atgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactt-taggtcccgaataacttgcagttttaagatct 302  Q
    ||||||||||||||| ||| ||||||||| ||||| ||||||||||||||||| |||| ||| |||||||| || |||||||||||    
T  30534666 atgtaagtatttttcgtaagacttaggtcttttaaattatttaattgtaacttgtaggccccaaataacttacatttttaagatct 30534581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 44291463 - 44291420
Alignment:
Q  145 gtatcacttacgtcatttaagttatttaattataacaagttagt 188  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||    
T  44291463 gtatcacttatgtcctttaagttatttaattgtaacaagttagt 44291420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 50898882 - 50898948
Alignment:
Q  221 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataactt 287  Q
    |||||||||||| ||||||||||||  |||||||| |||||||||||| |||| ||| ||||||||||    
T  50898882 taagtatttttcgtaacacttaggt-atttaagttgtttaattgtaacttttacgtctcgaataactt 50898948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 51265744 - 51265790
Alignment:
Q  221 taagtatttttcataacacttaggtcgtttaagttatttaattgtaa 267  Q
    |||||||||||||||  |||||| || ||||||||||||||||||||    
T  51265744 taagtatttttcatacaacttagatcctttaagttatttaattgtaa 51265790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 44291182 - 44291141
Alignment:
Q  269 tttaggtcccgaataacttgcagttttaagatctgaaatccc 310  Q
    ||||||||||||||||||| || ||||||||||| |||||||    
T  44291182 tttaggtcccgaataacttacatttttaagatctaaaatccc 44291141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 307
Target Start/End: Original strand, 48447315 - 48447402
Alignment:
Q  221 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaat 307  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||||| |||| | ||  |||||||| || ||||||||||| ||||    
T  48447315 taagtatttttcgtaacgcttaggtcctttaagttatttaattgtaacttttatgcccaaaataacttacatttttaagatctaaaat 48447402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 310
Target Start/End: Original strand, 12264801 - 12264890
Alignment:
Q  221 taagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaaatccc 310  Q
    |||||||||||| || |||||||||| || ||||||||||| ||||||||| || |  ||||||||| || ||| ||||| |||||||||    
T  12264801 taagtatttttcgtaccacttaggtctttcaagttatttaagtgtaacttttggccatgaataacttacattttaaagatttgaaatccc 12264890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 12422342 - 12422262
Alignment:
Q  221 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagat 300  Q
    |||||||| ||  |||||||||  || ||||||||||||||||||||| |||||||||||||||||||  | |||||||||    
T  12422342 taagtattgtttgtaacacttaaatcctttaagttatttaattgtaacttttaggtcccgaataacttatacttttaagat 12422262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 272
Target Start/End: Original strand, 28002279 - 28002330
Alignment:
Q  221 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttta 272  Q
    |||||| |||||||| |||||||||| |||||||| ||||||||||||||||    
T  28002279 taagtacttttcataccacttaggtcctttaagttgtttaattgtaacttta 28002330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 287
Target Start/End: Original strand, 41331168 - 41331249
Alignment:
Q  206 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataactt 287  Q
    |||||||||||  | ||| ||||||||||| |||||||||| |||||||||||||||| |||| |||||||  ||||||||||    
T  41331168 aacaagttagtagtttaaatatttttcatagcacttaggtc-tttaagttatttaattataacttttaggtatcgaataactt 41331249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 32857850 - 32857890
Alignment:
Q  227 tttttcataacacttaggtcgtttaagttatttaattgtaa 267  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  32857850 tttttcgtaacacttaggtcttttaagttatttaattgtaa 32857890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 183
Target Start/End: Complemental strand, 12422390 - 12422352
Alignment:
Q  145 gtatcacttacgtcatttaagttatttaattataacaag 183  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  12422390 gtatcacttacgtcttttaagttatttaattttaacaag 12422352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 28002235 - 28002283
Alignment:
Q  206 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagt 254  Q
    |||||||||||  | ||||||||||||||| |||||||||| |||||||    
T  28002235 aacaagttagtcctttaagtatttttcataccacttaggtcatttaagt 28002283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 32857805 - 32857837
Alignment:
Q  156 gtcatttaagttatttaattataacaagttagt 188  Q
    |||||||||||||||||||| ||||||||||||    
T  32857805 gtcatttaagttatttaattgtaacaagttagt 32857837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 18080600 - 18080645
Alignment:
Q  146 tatcacttacgtcatttaagttatttaattataacaagttagttat 191  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||    
T  18080600 tatcacttacgtcatttaagttatttaattgtaataagttagttat 18080645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 314
Target Start/End: Complemental strand, 2510263 - 2510154
Alignment:
Q  206 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaa-ctttaggtcccgaataacttgcagttttaagatctga 304  Q
    |||||||||||| | ||| |||||||  |||||||||| || |||||||||||||| |||||  |||||  | |||||||||| || |||||| || |||    
T  2510263 aacaagttagttctttaattattttttgtaacacttagctcctttaagttatttaagtgtaatttttagaccacgaataacttacatttttaaaatatga 2510164  T
Q  305 aatccctcaa 314  Q
    |||| |||||    
T  2510163 aatctctcaa 2510154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 3806871 - 3806972
Alignment:
Q  206 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaa 305  Q
    ||||||||||| || |||||||||||| || |||||||||| ||| | |||||||||| ||| |||  | || || |||||| || ||||||||| ||||    
T  3806871 aacaagttagtcatttaagtatttttcgtagcacttaggtccttttaattatttaattataatttttagccctgagtaacttacatttttaagatatgaa 3806970  T
Q  306 at 307  Q
    ||    
T  3806971 at 3806972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 8453098 - 8453163
Alignment:
Q  207 acaagttagttatgtaagtatttttcataacacttaggt-cgtttaagttatttaattgtaacttt 271  Q
    |||||||||| || ||||||||| ||||||||||||  | | |||||||||||| |||||||||||    
T  8453098 acaagttagtcatttaagtatttctcataacacttacatccttttaagttatttgattgtaacttt 8453163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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